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Literature summary for 4.1.1.39 extracted from

  • Maeda, N.; Kitano, K.; Fukui, T.; Ezaki, S.; Atomi, H.; Miki, K.; Imanaka, T.
    Ribulose bisphosphate carboxylase/oxygenase from the hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1 is composed solely of large subunits and forms a pentagonal structure (1999), J. Mol. Biol., 293, 57-66.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
plasmid harboring gene Pk-rbc1 transformed into Escherichia coli BL21(DE3) Thermococcus kodakarensis

Crystallization (Commentary)

Crystallization (Comment) Organism
sitting or hanging drop vapor diffusion, space group P3(1)21 or P3(2)21, cell parameters a : b : 233.7 A, c : 93.1 A Thermococcus kodakarensis

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O Thermococcus kodakarensis key enzyme of the Calvin cycle, first step in net photosynthetic CO2 assimilation and photorespiratory carbon oxidation, most abundant protein on earth 3-phospho-D-glycerate
-
?

Organism

Organism UniProt Comment Textmining
Thermococcus kodakarensis
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KOD1
-

Purification (Commentary)

Purification (Comment) Organism
recombinant enzyme Thermococcus kodakarensis

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Thermococcus kodakarensis 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme of the Calvin cycle, first step in net photosynthetic CO2 assimilation and photorespiratory carbon oxidation, most abundant protein on earth Thermococcus kodakarensis 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Thermococcus kodakarensis 3-phospho-D-glycerate + 2-phosphoglycolate
-
?

Subunits

Subunits Comment Organism
decamer composed solely of large subunits Thermococcus kodakarensis

Synonyms

Synonyms Comment Organism
Pk-Rubisco
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Thermococcus kodakarensis
ribulose bisphosphate carboxylase/oxygenase
-
Thermococcus kodakarensis
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Thermococcus kodakarensis
Rubisco
-
Thermococcus kodakarensis