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Literature summary for 4.1.1.39 extracted from

  • Parry, M.A.; Andralojc, P.J.; Mitchell, R.A.; Madgwick, P.J.; Keys, A.J.
    Manipulation of Rubisco: the amount, activity, function and regulation (2003), J. Exp. Bot., 54, 1321-1333.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
rbc gene introduced in Nicotiana tabacum Galdieria sulphuraria
rbc gene introduced in Nicotiana tabacum Helianthus annuus
rbc gene introduced in Nicotiana tabacum Phaeodactylum tricornutum
rbc gene introduced into Nicotiana tabacum Rhodospirillum rubrum
rbcS expressed in Escherichia coli, together with rbcL from cyanobacteria generates functional holoenzyme Triticum aestivum
rbcS expressed in Escherichia coli, together with rbcL from cyanobacteria generates functional holoenzyme Nicotiana tabacum
rbcS expressed in Escherichia coli, together with rbcL from cyanobacteria generates functional holoenzyme Oryza sativa
small subunit gene rbcS expressed in Escherichia coli, together with the gene encoding the large subunit, rbcL from cyanobacteria, generates a functional holoenzyme Olisthodiscus luteus
small subunit gene rbcS expressed in Escherichia coli, together with the gene encoding the large subunit, rbcL from cyanobacteria, generates a functional holoenzyme Cylindrotheca sp.

Crystallization (Commentary)

Crystallization (Comment) Organism
-
Chlamydomonas reinhardtii
-
Spinacia oleracea
-
Zea mays
-
Nicotiana tabacum
-
Rhodospirillum rubrum
-
Oryza sativa

Protein Variants

Protein Variants Comment Organism
L335V directed mutagenesis, 60% decrease in relative specificity factor Galdieria sulphuraria
L335V directed mutagenesis, 75% decrease in relative specificity factor Nicotiana tabacum
L361I directed mutagenesis, 21% decrease in relative specificity factor Chlamydomonas reinhardtii
M349L directed mutagenesis, 21% decrease in relative specificity factor Chlamydomonas reinhardtii
T342I directed mutagenesis, 36% decrease in relative specificity factor Chlamydomonas reinhardtii
V331A directed mutagenesis, 42% decrease in relative specificity factor Chlamydomonas reinhardtii

Localization

Localization Comment Organism GeneOntology No. Textmining
chloroplast
-
Chlamydomonas reinhardtii 9507
-
chloroplast
-
Triticum aestivum 9507
-
chloroplast
-
Spinacia oleracea 9507
-
chloroplast
-
Zea mays 9507
-
chloroplast
-
Nicotiana tabacum 9507
-
chloroplast
-
Avena sativa 9507
-
chloroplast
-
Galdieria sulphuraria 9507
-
chloroplast
-
Helianthus annuus 9507
-
chloroplast
-
Oryza sativa 9507
-
chloroplast
-
Olisthodiscus luteus 9507
-
chloroplast
-
Cylindrotheca sp. 9507
-
chloroplast
-
Phaeodactylum tricornutum 9507
-
chloroplast
-
Galdieria partita 9507
-

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O Chlamydomonas reinhardtii key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Triticum aestivum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Cereibacter sphaeroides key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Hordeum vulgare key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Spinacia oleracea key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Pisum sativum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Zea mays key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Nicotiana tabacum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Glycine max key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Arabidopsis thaliana key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Avena sativa key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Rhodobacter capsulatus key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Solanum lycopersicum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Galdieria sulphuraria key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Rhodospirillum rubrum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Helianthus annuus key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Oryza sativa key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Allochromatium vinosum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Olisthodiscus luteus key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Cylindrotheca sp. key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Phaeodactylum tricornutum key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Flaveria bidentis key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Galdieria partita key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Petunia sp. key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O Cylindrotheca sp. N1 key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation 3-phospho-D-glycerate
-
?

Organism

Organism UniProt Comment Textmining
Allochromatium vinosum
-
-
-
Arabidopsis thaliana
-
-
-
Avena sativa
-
-
-
Cereibacter sphaeroides
-
-
-
Chlamydomonas reinhardtii
-
-
-
Cylindrotheca sp.
-
-
-
Cylindrotheca sp. N1
-
-
-
Flaveria bidentis
-
-
-
Galdieria partita
-
-
-
Galdieria sulphuraria
-
-
-
Glycine max
-
soybean
-
Helianthus annuus
-
sunflower
-
Hordeum vulgare
-
barley
-
Nicotiana tabacum
-
tobacco
-
Olisthodiscus luteus
-
-
-
Oryza sativa
-
rice
-
Petunia sp.
-
-
-
Phaeodactylum tricornutum
-
-
-
Pisum sativum
-
pea
-
Rhodobacter capsulatus
-
-
-
Rhodospirillum rubrum
-
-
-
Solanum lycopersicum
-
tomato
-
Spinacia oleracea
-
spinach
-
Triticum aestivum
-
wheat
-
Zea mays
-
corn,maize
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Chlamydomonas reinhardtii 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Triticum aestivum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Cereibacter sphaeroides 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Hordeum vulgare 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Spinacia oleracea 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Pisum sativum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Zea mays 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Nicotiana tabacum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Glycine max 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Arabidopsis thaliana 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Avena sativa 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Rhodobacter capsulatus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Solanum lycopersicum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Galdieria sulphuraria 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Rhodospirillum rubrum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Helianthus annuus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Oryza sativa 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Allochromatium vinosum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Olisthodiscus luteus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Cylindrotheca sp. 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Phaeodactylum tricornutum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Flaveria bidentis 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Galdieria partita 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Petunia sp. 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Chlamydomonas reinhardtii 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Triticum aestivum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Cereibacter sphaeroides 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Hordeum vulgare 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Spinacia oleracea 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Pisum sativum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Zea mays 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Nicotiana tabacum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Glycine max 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Arabidopsis thaliana 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Avena sativa 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Rhodobacter capsulatus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Solanum lycopersicum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Galdieria sulphuraria 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Rhodospirillum rubrum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Helianthus annuus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Oryza sativa 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Allochromatium vinosum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Olisthodiscus luteus 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Cylindrotheca sp. 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Phaeodactylum tricornutum 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Flaveria bidentis 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Galdieria partita 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Petunia sp. 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
Cylindrotheca sp. N1 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + CO2 + H2O key enzyme responsible for photosynthetic carbon assimilation and photorespiratory carbon oxidation Cylindrotheca sp. N1 3-phospho-D-glycerate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Chlamydomonas reinhardtii 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Triticum aestivum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Cereibacter sphaeroides 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Hordeum vulgare 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Spinacia oleracea 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Pisum sativum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Zea mays 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Nicotiana tabacum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Glycine max 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Arabidopsis thaliana 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Avena sativa 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Rhodobacter capsulatus 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Solanum lycopersicum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Galdieria sulphuraria 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Rhodospirillum rubrum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Helianthus annuus 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Oryza sativa 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Allochromatium vinosum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Olisthodiscus luteus 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Cylindrotheca sp. 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Phaeodactylum tricornutum 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Flaveria bidentis 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Galdieria partita 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Petunia sp. 3-phospho-D-glycerate + 2-phosphoglycolate
-
?
D-ribulose 1,5-bisphosphate + O2
-
Cylindrotheca sp. N1 3-phospho-D-glycerate + 2-phosphoglycolate
-
?

Synonyms

Synonyms Comment Organism
Rubisco
-
Chlamydomonas reinhardtii
Rubisco
-
Triticum aestivum
Rubisco
-
Cereibacter sphaeroides
Rubisco
-
Hordeum vulgare
Rubisco
-
Spinacia oleracea
Rubisco
-
Pisum sativum
Rubisco
-
Zea mays
Rubisco
-
Nicotiana tabacum
Rubisco
-
Glycine max
Rubisco
-
Arabidopsis thaliana
Rubisco
-
Avena sativa
Rubisco
-
Rhodobacter capsulatus
Rubisco
-
Solanum lycopersicum
Rubisco
-
Galdieria sulphuraria
Rubisco
-
Rhodospirillum rubrum
Rubisco
-
Helianthus annuus
Rubisco
-
Oryza sativa
Rubisco
-
Allochromatium vinosum
Rubisco
-
Olisthodiscus luteus
Rubisco
-
Cylindrotheca sp.
Rubisco
-
Phaeodactylum tricornutum
Rubisco
-
Flaveria bidentis
Rubisco
-
Galdieria partita
Rubisco
-
Petunia sp.