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Literature summary for 3.4.21.5 extracted from

  • Baum, B.; Muley, L.; Heine, A.; Smolinski, M.; Hangauer, D.; Klebe, G.
    Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin (2009), J. Mol. Biol., 391, 552-564.
    View publication on PubMed
Search for more literature for 3.4.21.5

Crystallization (Commentary)

Crystallization (Comment) Organism
hanging drop vapor diffusion method, using 28% (w/v) PEG 8000 and 100 mM sodium phosphate buffer (pH 7.5) Homo sapiens

Inhibitors

Inhibitors Comment Organism Structure
(2S)-1-[(2R)-2-aminobutanoyl]-N-(3-chlorobenzyl)pyrrolidine-2-carboxamide
-
 Homo sapiens
(2S)-1-[(2R)-2-aminobutanoyl]-N-(4-carbamimidoylbenzyl)pyrrolidine-2-carboxamide
-
 Homo sapiens
beta-phenyl-D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide
-
 Homo sapiens
beta-phenyl-D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide
-
 Homo sapiens
D-Phe-Pro-Arg potent inhibitor Homo sapiens
D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide
-
 Homo sapiens
D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide
-
 Homo sapiens

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
fibrinopeptide A + H2O Homo sapiens
-
 ?
-
 ?

Organism

Organism UniProt Comment Textmining
Homo sapiens
-
-
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
fibrinopeptide A + H2O
-
 Homo sapiens ?
-
 ?
Pefachrom tPa + H2O
-
 Homo sapiens ?
-
 ?

Synonyms

Synonyms Comment Organism
alpha-thrombin
-
 Homo sapiens

Ki Value [mM]

Ki Value [mM] Ki Value maximum [mM] Inhibitor Comment Organism Structure
0.0000001
-
 beta-phenyl-D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens
0.000004
-
 D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens
0.000047
-
 beta-phenyl-D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens
0.00018
-
 D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens
0.00018
-
 (2S)-1-[(2R)-2-aminobutanoyl]-N-(4-carbamimidoylbenzyl)pyrrolidine-2-carboxamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens
0.0068
-
 (2S)-1-[(2R)-2-aminobutanoyl]-N-(3-chlorobenzyl)pyrrolidine-2-carboxamide in 50 mM Tris-HCl, pH 7.4, 154 mM NaCl, 5% dimethyl sulfoxide, 0.1% (w/v) PEG 8000, at 25 °C Homo sapiens