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Literature summary for 3.2.1.17 extracted from

  • Ding, J.; Wang, R.; Yang, F.; Zhao, L.; Qin, Y.; Zhang, G.; Yan, X.
    Identification and characterization of a novel phage-type like lysozyme from Manila clam, Ruditapes philippinarum (2014), Dev. Comp. Immunol., 47, 81-89.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
gene RpLysPh, DNA and amino acid sequence determination and analysis, phylogenetic analysis and real-time quantitative RT-PCR expression analysis Ruditapes philippinarum

Localization

Localization Comment Organism GeneOntology No. Textmining
additional information no signal peptide determined at the N-terminus Ruditapes philippinarum
-
-

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
17460
-
x * 17460, sequence calculation Ruditapes philippinarum

Organism

Organism UniProt Comment Textmining
Ruditapes philippinarum A0A075X1K1 gene RpLysPh
-

Source Tissue

Source Tissue Comment Organism Textmining
foot
-
Ruditapes philippinarum
-
gastrointestinal tract
-
Ruditapes philippinarum
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gill
-
Ruditapes philippinarum
-
hemocyte highest activity Ruditapes philippinarum
-
mantle
-
Ruditapes philippinarum
-
additional information tissue-specific expression, real-time quantitative RT-PCR expression analysis, overview Ruditapes philippinarum
-
muscle
-
Ruditapes philippinarum
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
additional information the enzyme shows lytic activity against Micrococcus lysodeikticus, the recombinant enzyme shows antibacterial activity against both Gram-positive and Gram-negative bacteria, including Vibrio alginolyticus, Vibrio harveyi, Vibrio anguillarum, Escherichia coli, Bacillus subtilis, and Micrococcus lysodeikticus Ruditapes philippinarum ?
-
?

Subunits

Subunits Comment Organism
? x * 17460, sequence calculation Ruditapes philippinarum
More three-dimensional structure comparison, overview Ruditapes philippinarum

Synonyms

Synonyms Comment Organism
phage-type like lysozyme
-
Ruditapes philippinarum

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
60
-
lytic activity against Micrococcus lysodeikticus Ruditapes philippinarum

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
5.5
-
lytic activity against Micrococcus lysodeikticus Ruditapes philippinarum

pI Value

Organism Comment pI Value Maximum pI Value
Ruditapes philippinarum sequence calculation
-
7.1

Expression

Organism Comment Expression
Ruditapes philippinarum the enzyme expression in induced in gills by lipopolysaccharide, peptidoglycan, polyinosinic-polycytidylic acid, and whole glucan particles challenge up

General Information

General Information Comment Organism
evolution phylogenetic analysis, the enzyme shares a similar origin with the bacterial phage-type lysozyme group Ruditapes philippinarum
additional information conserved three residues essential for catalytic activity in phage-type lysozyme are Glu20, Asp29, and Thr35. Comparison of the three-dimensional models of Ruditapes philippinarum and Coxiella burnetii lysozymes Ruditapes philippinarum