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oxalate + H+
CO2 + formate
oxalate + H+
formate + CO2
additional information
?
-
Oxalate
?
-
induction by oxalate
-
-
?
Oxalate
?
-
induced by oxalate or succinate
-
-
?
Oxalate
?
-
induction by oxalate
-
-
?
Oxalate
Formate + CO2
-
-
traces of H2O2 and oxidation products of aromatic amines and phenols are formed, these aromatic compounds are added with the purpose of stimulating and protecting the enzyme during its catalytic action
?
Oxalate
Formate + CO2
-
-
-
?
Oxalate
Formate + CO2
-
-
-
-
?
Oxalate
Formate + CO2
-
-
-
-
ir
Oxalate
Formate + CO2
-
-
-
?
Oxalate
Formate + CO2
-
the first two steps of the catalytic mechanism are reversible, the last step is irreversible
-
-
ir
Oxalate
Formate + CO2
-
-
-
?
Oxalate
Formate + CO2
-
-
-
?
Oxalate
Formate + CO2
-
-
-
?
Oxalate
Formate + CO2
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
-
?
oxalate + H+
CO2 + formate
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
Atheliachaete sanguinea
-
-
-
?
oxalate + H+
formate + CO2
Atheliachaete sanguinea
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
Atheliachaete sanguinea T51
-
-
-
?
oxalate + H+
formate + CO2
Atheliachaete sanguinea T51
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
678138, 687082, 691955, 692903, 694237, 713879, 714726, 715299, 716726, 727124, 727707, 728195, 748313, 748822 -
-
?
oxalate + H+
formate + CO2
-
-
-
-
ir
oxalate + H+
formate + CO2
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
ir
oxalate + H+
formate + CO2
-
acts exclusively on oxalate
-
?
oxalate + H+
formate + CO2
catalytic mechanism involves the requirement of an active site proton donor: Glu-162, catalytic cycle, enzyme structure, N-terminal domain is the catalytically active domain, dioxygen-dependent reaction involves no net redox change
-
?
oxalate + H+
formate + CO2
contains two potential active sites per subunit
-
?
oxalate + H+
formate + CO2
enzyme structure, YvrK possesses two potential active sites per subunit, but only one could be fully occupied by manganese, mechanism, catalytic cycle
-
?
oxalate + H+
formate + CO2
-
mechanism, multistep model in which a reversible, proton-coupled, electron transfer from bound oxalate to the Mn-enzyme gives an oxalate radical, which decarboxylates to yield a formate radical anion, subsequent reduction and protonation of this intermediate then gives formate, irreversible decarboxylation step, no net redox change between substrate and products, roles of Arg-270 and Glu-333 in catalysis
-
?
oxalate + H+
formate + CO2
OXDC acts exclusively on oxalate, Glu-333 of the second Mn-binding site serves as a proton donor in the production of formate, catalytic mechanism, enzyme structure
-
?
oxalate + H+
formate + CO2
involved in the elevation of cytoplasmic pH
-
?
oxalate + H+
formate + CO2
oxalate-degrading enzyme
-
?
oxalate + H+
formate + CO2
oxalate-degrading enzyme, may be involved in the elevation of cytoplasmic pH, because the reaction involves the net consumption of a proton
-
?
oxalate + H+
formate + CO2
-
oxalate-degrading enzyme, possibly involved in decarboxylative phosphorylation, YvrK could contribute to the raising of cytoplasmic pH when the organism encounters low values of pH in soil and rotting vegetation
-
?
oxalate + H+
formate + CO2
-
regulation of OxdD synthesis and assembly in the spore coat, transcription of oxdD gene is induced during sporulation as a monocistronic unit under the control of sigmaK and is negatively regulated by GerE
-
?
oxalate + H+
formate + CO2
catalytic cycle involving radical formation with O2, overview, only Mn2+ binding site 1 is catalytically active, while Mn2+ binding site 2 is purely structural, overview
-
-
ir
oxalate + H+
formate + CO2
-
catalytic cycle, overview, the enzyme converts oxalate to formate and carbon dioxide, via an enzyme-bound formyl radical catalytic intermediate, and uses dioxygen as a cofactor despite the reaction involving no net redox change, overview, a proton transfer event occurs during a rate-limiting step, hydron exchange in formate, semiempirical quantum mechanical calculation, overview
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
mechanism, multistep model in which a reversible, proton-coupled, electron transfer from bound oxalate to the Mn-enzyme gives an oxalate radical, which decarboxylates to yield a formate radical anion, subsequent reduction and protonation of this intermediate then gives formate, irreversible decarboxylation step, no net redox change between substrate and products, roles of Arg-270 and Glu-333 in catalysis
-
?
oxalate + H+
formate + CO2
-
acts exclusively on oxalate
-
?
oxalate + H+
formate + CO2
-
oxalate-degrading enzyme, possibly involved in decarboxylative phosphorylation, YvrK could contribute to the raising of cytoplasmic pH when the organism encounters low values of pH in soil and rotting vegetation
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
contains two potential active sites per subunit
-
?
oxalate + H+
formate + CO2
enzyme structure, YvrK possesses two potential active sites per subunit, but only one could be fully occupied by manganese, mechanism, catalytic cycle
-
?
oxalate + H+
formate + CO2
catalytic mechanism involves the requirement of an active site proton donor: Glu-162, catalytic cycle, enzyme structure, N-terminal domain is the catalytically active domain, dioxygen-dependent reaction involves no net redox change
-
?
oxalate + H+
formate + CO2
involved in the elevation of cytoplasmic pH
-
?
oxalate + H+
formate + CO2
-
-
-
ir
oxalate + H+
formate + CO2
catalytic cycle involving radical formation with O2, overview, only Mn2+ binding site 1 is catalytically active, while Mn2+ binding site 2 is purely structural, overview
-
-
ir
oxalate + H+
formate + CO2
oxalate-degrading enzyme
-
?
oxalate + H+
formate + CO2
oxalate-degrading enzyme, may be involved in the elevation of cytoplasmic pH, because the reaction involves the net consumption of a proton
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
?
oxalate + H+
formate + CO2
OXDC acts exclusively on oxalate, Glu-333 of the second Mn-binding site serves as a proton donor in the production of formate, catalytic mechanism, enzyme structure
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
specific for oxalate
-
?
oxalate + H+
formate + CO2
oxalate-catabolizing enzyme
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
Pandorea sp.
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
oxalate + H+
formate + CO2
-
inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae
-
?
oxalate + H+
formate + CO2
-
-
-
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations
-
?
additional information
?
-
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations, at less than 1% of the oxalate decarboxylation rate
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations, at less than 1% of the oxalate decarboxylation rate
-
?
additional information
?
-
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations, at less than 1% of the oxalate decarboxylation rate
-
?
additional information
?
-
-
the enzyme also shows oxalate oxidase activity, catalytic cycle, overview
-
-
?
additional information
?
-
the enzyme also shows oxalate oxidase activity, catalytic cycle, overview
-
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations, at less than 1% of the oxalate decarboxylation rate
-
?
additional information
?
-
enzyme catalyzes minor side reactions: oxalate oxidation to produce H2O2 and oxalate-dependent, H2O2-independent dye oxidations, at less than 1% of the oxalate decarboxylation rate
-
?
additional information
?
-
the enzyme also shows oxalate oxidase activity, catalytic cycle, overview
-
-
?
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additional information
additional information
-
0.006
oxalate
-
-
1
oxalate
pH 4, 26°C, R270K mutant OxdC
1.14
oxalate
pH 4.0, 26°C, recombinant mutant R270Q
1.9
oxalate
pH 4.0, 26°C, recombinant mutant R92K
2
oxalate
pH 4, 26°C, R92K mutant OxdC
2
oxalate
pH 4.0, recombinant mutant E162A/N163S/S164N
2.3
oxalate
pH 4.0, 26°C, recombinant deletion mutant DELTA163-163
2.9
oxalate
mutant enzyme E101A , in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
2.9
oxalate
mutant enzyme E101Q/E280Q, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
3
oxalate
mutant enzyme E280A , in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
3.4
oxalate
mutant enzyme E101D, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
4
oxalate
pH 4, 26°C, E333A mutant OxdC
4
oxalate
mutant enzyme E101Q, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
4
oxalate
wild type enzyme, at pH 4.2 and 25°C
4.1
oxalate
pH 4.0, 26°C, recombinant mutant E333A
5
oxalate
recombinant OXDC, expressed in Nicotiana tabaccum
5.4
oxalate
mutant enzyme E280D, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
6.3
oxalate
pH 4.0, 26°C, recombinant mutant E333D
6.6
oxalate
pH 4.0, recombinant wild-type enzyme
6.6 - 16.4
oxalate
pH 4.0, 26°C, recombinant wild-type enzyme
8
oxalate
pH 4, 26°C, R270A mutant OxdC
8
oxalate
pH 4.0, 26°C, recombinant mutant R270A
8.4
oxalate
wild type enzyme, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
9.1
oxalate
pH 4.0, recombinant mutant S161D/E162A
10.1
oxalate
mutant enzyme E280Q, in 50 mM NaOAc (pH 4.2), 0.2% (v/v) Triton X-100, 0.5 mM o-phenylenediamine, at 22°C
11.2
oxalate
pH 4.0, 26°C, recombinant mutant D297A
11.6
oxalate
pH 4.0, 26°C, recombinant mutant H299A
12.7
oxalate
-
at pH 5.0 and 35°C
13.5
oxalate
pH 4.0, 26°C, recombinant mutant E162Q
14
oxalate
pH 4, 26°C, E162Q mutant OxdC
15
oxalate
pH 5, 26°C, recombinant YvrK
15.46
oxalate
-
soluble enzyme, citrate buffer (0.05 M, pH 4.0), at 37°C
16.4
oxalate
pH 4, 26°C, wild-type OxdC
17.4
oxalate
pH 4.0, 26°C, recombinant mutant E162D
22.61
oxalate
-
Eupergit C-immobilized enzyme, citrate buffer (0.05 M, pH 4.0), at 37°C
25
oxalate
pH 4.0, 26°C, recombinant mutant T165P
27
oxalate
mutant enzyme W132F, at pH 4.2 and 25°C
31
oxalate
pH 4.0, 26°C, recombinant mutant S164A
71
oxalate
pH 4.0, 26°C, recombinant mutant E161A
97
oxalate
pH 4.0, recombinant mutant S161D/N163S/S164N
5
oxalic acid
-
non-His-tagged recombinant enzyme
7
oxalic acid
-
His-tagged recombinant enzyme
additional information
additional information
-
kinetic data, kinetic mechanism
-
additional information
additional information
kinetics of recombinant wild-type and mutant enzymes, overview
-
additional information
additional information
-
kinetics of recombinant wild-type and mutant enzymes, overview
-
additional information
additional information
-
Fourier transform infrared spectroscopy to monitor in real time both substrate consumption and product formation, the Km for oxalate determined using this assay is 3.8fold lower than that estimated from a stopped assay, overview, solvent deuterium kinetic isotope effect, overview
-
additional information
additional information
kinetic analysis, different assay methods
-
additional information
additional information
-
steady-state kinetics of mutant enzyme, minimal kinetic model
-
additional information
additional information
steady-state kinetics of the T165S and T165V enzyme mutants, overview
-
additional information
additional information
-
steady-state kinetics of the T165S and T165V enzyme mutants, overview
-
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D297A
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
E101A
the mutant shows strongly decreased activity
E101D
the mutant shows strongly decreased activity
E101Q
the mutant shows strongly decreased activity
E101Q/E280Q
the mutant shows strongly decreased activity
E162A/N163S/S164N
site-directed mutagenesis, the mutant shows highly reduced activity compared to the wild-type enzyme
E162Q/E333Q
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
E280A
the mutant shows strongly decreased activity
E280D
the mutant shows strongly decreased activity
E280Q
the mutant shows strongly decreased activity
E333D
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
E33D
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
H299A
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
R270E
mutant with 20fold reduced CO2 production
R270Q
site-directed mutagenesis, the mutant shows altered kinetics compared to the wild-type enzyme
R92K/R270K
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
S161D/E162A
site-directed mutagenesis, the mutant shows highly reduced activity compared to the wild-type enzyme
S161D/E162A/N163S
site-directed mutagenesis, almost inactive mutant
S161D/E162A/N163S/S164N
site-directed mutagenesis, almost inactive mutant
S161D/E162A/N163S/S164N/T165Q
site-directed mutagenesis, almost inactive mutant
S161D/E162S/N163S/S164N
site-directed mutagenesis, almost inactive mutant
S161D/N163S/S164N
site-directed mutagenesis, the mutant shows about 60% reduced activity compared to the wild-type enzyme
S161T
the mutant shows reduced specific activity compared to the wild type enzyme
S164A
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
T165P
site-directed mutagenesis, altered comformation with dominant conformation of the lid compared to the wild-type enzyme
Y340F
mutant with 13fold reduced CO2 production
D297A
-
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
-
E162A
-
Mn2+-binding site 1 mutant, inactive
-
E333A
-
Mn2+-binding site 2 mutant, 4-6% of wild-type activity at pH 4, lower Km for oxalate, kcat/Km is 25% that of wild-type
-
E333Q
-
Mn2+-binding site 2 mutant, inactive
-
H299A
-
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme
-
R270K
-
Mn2+-binding site 2 mutant, kcat/Km is 43% that of wild-type
-
S161A
-
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme, structure analysis
-
T165S
-
site-directed mutagenesis, the T165S enzyme variant exhibits similar catalytic activity to wild-type enzyme when adjusted for the amount of Mn(II) incorporated into the recombinant protein
-
W132F
-
the mutant with increased manganese content shows reduced activity compared to the wild type enzyme
-
E333A
-
mutant of the Mn-binding site in domain II, 25fold reduced formate production, 4fold reduced CO2 production
-
R270E
-
mutant with 20fold reduced CO2 production
-
Y340F
-
mutant with 13fold reduced CO2 production
-
E162A
Mn2+-binding site 1 mutant, inactive
E162A
site-directed mutagenesis, the mutant lacks both oxalate decarboxylase and oxalate oxidase activities, structure analysis
E162D
site-directed mutagenesis, E162D mutant retains 29% of the decarboxylase activity compared to the wild-type enzyme
E162D
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and slightly reduced activity compared to the wild-type enzyme
E162Q
Mn2+-binding site 1 mutant, Vmax and kcat/Km is 1% that of wild-type
E162Q
site-directed mutagenesis, E162Q mutant retains only 1% of the decarboxylase activity compared to the wild-type enzyme
E162Q
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
E333A
Mn2+-binding site 2 mutant, 4-6% of wild-type activity at pH 4, lower Km for oxalate, kcat/Km is 25% that of wild-type
E333A
mutant of the Mn-binding site in domain II, 25fold reduced formate production, 4fold reduced CO2 production
E333A
site-directed mutagenesis, the mutant shows reduced oxalate decarboxylase and oxalate oxidase activities compared to the wild-type enzyme
E333Q
Mn2+-binding site 2 mutant, inactive
E333Q
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
E333Q
site-directed mutagenesis, the mutant lacks both oxalate decarboxylase and oxalate oxidase activities
R270A
Mn2+-binding site 2 mutant, kcat/Km is 3% that of wild-type
R270A
site-directed mutagenesis, the mutant shows altered kinetics compared to the wild-type enzyme
R270K
Mn2+-binding site 2 mutant, kcat/Km is 43% that of wild-type
R270K
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
R92A
Mn2+-binding site 1 mutant, inactive
R92A
site-directed mutagenesis, the mutant lacks both oxalate decarboxylase and oxalate oxidase activities, structure analysis
R92K
Mn2+-binding site 1 mutant, kcat/Km is 7% that of wild-type
R92K
-
site-directed mutagenesis, the mutant enzyme shows altered kinetics and reduced activity compared to the wild-type enzyme
R92K
site-directed mutagenesis, the mutant lacks both oxalate decarboxylase and oxalate oxidase activities
S161A
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to the wild-type enzyme, structure analysis
S161A
the mutant shows increased specific activity compared to the wild type enzyme
T165S
the mutant shows reduced specific activity compared to the wild type enzyme
T165S
site-directed mutagenesis, the T165S enzyme variant exhibits similar catalytic activity to wild-type enzyme when adjusted for the amount of Mn(II) incorporated into the recombinant protein
T165V
the mutant shows strongly reduced specific activity compared to the wild type enzyme
T165V
site-directed mutagenesis, removal a conserved Arg/Thr hydrogen bonding interaction, the mutant exhibits impaired catalytic activity. The T165V OxDC variant exhibits a 15fold reduced catalytic efficiency and a lower level of oxalate consumption per dioxygen molecule compared to the wild-type
T165V
the catalytic efficiency for decarboxylase activity in the mutant is approximately ten times lower than in wild type
W132F
site-directed mutagenesis, the mutation causes structural changes in the N-terminal and C-terminal metal center, superimposing of the X-ray crystal structures of the Mn-containing wild-type enzyme, PDB ID 1UW8, and the Co-containing W132F enzyme mutant
W132F
the mutant with increased manganese content shows reduced activity compared to the wild type enzyme
R92A
-
Mn2+-binding site 1 mutant, inactive
-
R92A
-
site-directed mutagenesis, the mutant lacks both oxalate decarboxylase and oxalate oxidase activities, structure analysis
-
T165V
-
site-directed mutagenesis, removal a conserved Arg/Thr hydrogen bonding interaction, the mutant exhibits impaired catalytic activity. The T165V OxDC variant exhibits a 15fold reduced catalytic efficiency and a lower level of oxalate consumption per dioxygen molecule compared to the wild-type
-
T165V
-
the catalytic efficiency for decarboxylase activity in the mutant is approximately ten times lower than in wild type
-
additional information
-
oxdD insertional mutant AH2898 missing OxdD protein
additional information
construction of deletion mutant DELTA162-163 or inactive deletion mutant DELTA162-164, structure analysis, manganese content of mutant enzymes, overview
additional information
the decarboxylase can be converted into an oxidase by mutating amino acids of the Mn2+-binding lid that include Glu162 with specificity switches, Mn2+ content of mutant enzymes, overview
additional information
-
the decarboxylase can be converted into an oxidase by mutating amino acids of the Mn2+-binding lid that include Glu162 with specificity switches, Mn2+ content of mutant enzymes, overview
additional information
-
mutation of Glu 333 present in domain II leads to a reduction in the activity of the enzyme
additional information
-
construction of deletion mutant DELTA162-163 or inactive deletion mutant DELTA162-164, structure analysis, manganese content of mutant enzymes, overview
-
additional information
expression of the enzyme in transgenic lettuce, Lactuca sativa, plants confers resistance to Sclerotinia sclerotiorum, overview
additional information
-
expression of the enzyme in transgenic lettuce, Lactuca sativa, plants confers resistance to Sclerotinia sclerotiorum, overview
-
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Sclerotinia sclerotiorum
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Cavia porcellus
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Aspergillus niger
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Aspergillus phoenicis
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Trametes versicolor
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Flammulina velutipes
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Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution
Biochemistry
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Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 / CU1065 (O34714)
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Production of organic acids and oxalate decarboxylase in lignin-degrading white rot fungi
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2002
Trametes versicolor, Trametes ochracea, Dichomitus squalens, no activity in Phanerochaete chrysosporium, no activity in Phlebiopsis gigantea, no activity in Radulodon erikssonii, no activity in Trichaptum fusco-violaceum, Atheliachaete sanguinea, no activity in Ceriporiopsis subvermispora, no activity in Haploporus odorus strain T154, no activity in Nematoloma frowardii, no activity in Ceriporiopsis subvermispora CZ-3, Trametes ochracea T7, Atheliachaete sanguinea T51, no activity in Radulodon erikssonii T84, no activity in Trichaptum fusco-violaceum T21, no activity in Phlebiopsis gigantea T55, no activity in Phanerochaete chrysosporium F1767, Dichomitus squalens PO114, no activity in Nematoloma frowardii b19
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Reinhardt, L.A.; Svedruzic, D.; Chang, C.H.; Cleland, W.W.; Richards, N.G.J.
Heavy atom isotope effects on the reaction catalyzed by the oxalate decarboxylase from Bacillus subtilis
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Bacillus subtilis, Bacillus subtilis 168
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Bacillus subtilis YvrK is an acid-induced oxalate decarboxylase
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Bacillus subtilis, Bacillus subtilis 168
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Assembly of an oxalate decarboxylase produced under sigmaK control into the Bacillus subtilis spore coat
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Bacillus subtilis
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Oxalate decarboxylase from Collybia velutipes. Molecular cloning and its overexpression to confer resistance to fungal infection in transgenic tobacco and tomato
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Flammulina velutipes (Q9UVK4), Flammulina velutipes
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Tanner, A.; Bowater, L.; Fairhurst, S.A.; Bornemann, S.
Oxalate decarboxylase requires manganese and dioxygen for activity. Overexpression and characterization of Bacillus subtilis YvrK and YoaN
J. Biol. Chem.
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43627-43634
2001
Bacillus subtilis (O34714), Bacillus subtilis (O34767), Bacillus subtilis, Bacillus subtilis 168 (O34714), Bacillus subtilis 168 (O34767)
brenda
Just, V.J.; Stevenson, C.E.M.; Bowater, L.; Tanner, A.; Lawson, D.M.; Bornemann, S.
A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site
J. Biol. Chem.
279
19867-19874
2004
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 (O34714)
brenda
Kathiara, M.; Wood, D.A.; Evans, C.S.
Detection and partial characterization of oxalate decarboxylase from Agaricus bisporus
Mycol. Res.
104
345-350
2000
Agaricus bisporus
brenda
Chang, C.H.; Svedruzic, D.; Ozarowski, A.; Walker, L.; Yeagle, G.; Britt, R.D.; Angerhofer, A.; Richards, N.G.
EPR spectroscopic characterization of the manganese center and a free radical in the oxalate decarboxylase reaction: identification of a tyrosyl radical during turnover
J. Biol. Chem.
279
52840-52849
2004
Bacillus subtilis
brenda
Svedruzic, D.; Liu, Y.; Reinhardt, L.A.; Wroclawska, E.; Cleland, W.W.; Richards, N.G.
Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis
Arch. Biochem. Biophys.
464
36-47
2007
Bacillus subtilis
brenda
Just, V.J.; Burrell, M.R.; Bowater, L.; McRobbie, I.; Stevenson, C.E.; Lawson, D.M.; Bornemann, S.
The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations
Biochem. J.
407
397-406
2007
Bacillus subtilis (O34714), Bacillus subtilis 168 (O34714)
brenda
Muthusamy, M.; Burrell, M.R.; Thorneley, R.N.; Bornemann, S.
Real-time monitoring of the oxalate decarboxylase reaction and probing hydron exchange in the product, formate, using fourier transform infrared spectroscopy
Biochemistry
45
10667-10673
2006
Bacillus subtilis
brenda
Burrell, M.R.; Just, V.J.; Bowater, L.; Fairhurst, S.A.; Requena, L.; Lawson, D.M.; Bornemann, S.
Oxalate decarboxylase and oxalate oxidase activities can be interchanged with a specificity switch of up to 282,000 by mutating an active site lid
Biochemistry
46
12327-12336
2007
Bacillus subtilis (O34714), Bacillus subtilis
brenda
Angerhofer, A.; Moomaw, E.W.; Garcia-Rubio, I.; Ozarowski, A.; Krzystek, J.; Weber, R.T.; Richards, N.G.
Multifrequency EPR studies on the Mn(II) centers of oxalate decarboxylase
J. Phys. Chem. B
111
5043-5046
2007
Bacillus subtilis
brenda
Dias, B.B.; Cunha, W.G.; Morais, L.S.; Vianna, G.R.; Rech, E.L.; de Capdeville, G.; Aragao, F.J.
Expression of an oxalate decarboxylase gene from Flammulina sp. in transgenic lettuce (Lactuca sativa) plants and resistance to Sclerotinia sclerotiorum
Plant Pathol.
55
187-193
2006
Flammulina sp. (Q870M8), Flammulina sp. IJF 140502 (Q870M8)
brenda
Scarpellini, M.; Gaetjens, J.; Martin, O.J.; Kampf, J.W.; Sherman, S.E.; Pecoraro, V.L.
Modeling the resting state of oxalate oxidase and oxalate decarboxylase enzymes
Inorg. Chem.
47
3584-3593
2008
Bacillus subtilis, Thermotoga maritima
brenda
Grujic, D.; Salido, E.C.; Shenoy, B.C.; Langman, C.B.; McGrath, M.E.; Patel, R.J.; Rashid, A.; Mandapati, S.; Jung, C.W.; Margolin, A.L.
Hyperoxaluria is reduced and nephrocalcinosis prevented with an oxalate-degrading enzyme in mice with hyperoxaluria
Am. J. Nephrol.
29
86-93
2009
Mus musculus
brenda
Kolandaswamy, A.; George, L.; Sadasivam, S.
Heterologous expression of oxalate decarboxylase in Lactobacillus plantarum NC8
Curr. Microbiol.
58
117-121
2009
Bacillus subtilis
brenda
Walz, A.; Zingen-Sell, I.; Theisen, S.; Kortekamp, A.
Reactive oxygen intermediates and oxalic acid in the pathogenesis of the necrotrophic fungus Sclerotinia sclerotiorum
Eur. J. Plant Pathol.
120
317-330
2008
Trametes versicolor
brenda
MacLellan, S.R.; Helmann, J.D.; Antelmann, H.
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis
J. Bacteriol.
191
931-939
2009
Bacillus subtilis, Bacillus subtilis 168 / CU1065
brenda
Shen, Y.H.; Liu, R.J.; Wang, H.Q.
Oxalate decarboxylase from Agrobacterium tumefaciens C58 is translocated by a twin arginine translocation system
J. Microbiol. Biotechnol.
18
1245-1251
2008
Agrobacterium tumefaciens, Agrobacterium tumefaciens C58 / ATCC 33970
brenda
MacLellan, S.R.; Wecke, T.; Helmann, J.D.
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis
Mol. Microbiol.
69
954-967
2008
Bacillus subtilis, Bacillus subtilis 168 / CU1065
brenda
Cassland, P.; Sjoede, A.; Winestrand, S.; Joensson, L.J.; Nilvebrant, N.O.
Evaluation of oxalate decarboxylase and oxalate oxidase for industrial applications
Appl. Biochem. Biotechnol.
161
255-263
2010
Aspergillus niger
brenda
Zhu, C.X.; Hong, F.
Induction of an oxalate decarboxylase in the filamentous fungus Trametes versicolor by addition of inorganic acids
Appl. Biochem. Biotechnol.
160
655-664
2010
Trametes versicolor, Trametes versicolor PRL572
brenda
Moomaw, E.W.; Angerhofer, A.; Moussatche, P.; Ozarowski, A.; Garcia-Rubio, I.; Richards, N.G.
Metal dependence of oxalate decarboxylase activity
Biochemistry
48
6116-6125
2009
Bacillus subtilis (O34714), Bacillus subtilis
brenda
Cowley, A.B.; Poage, D.W.; Dean, R.R.; Meschter, C.L.; Ghoddusi, M.; Li, Q.S.; Sidhu, H.
14-day repeat-dose oral toxicity evaluation of oxazyme in rats and dogs
Int. J. Toxicol.
29
20-31
2010
Bacillus subtilis
brenda
Tabares, L.C.; Gaetjens, J.; Hureau, C.; Burrell, M.R.; Bowater, L.; Pecoraro, V.L.; Bornemann, S.; Un, S.
pH-Dependent structures of the manganese binding sites in oxalate decarboxylase as revealed by high-field electron paramagnetic resonance
J. Phys. Chem. B
113
9016-9025
2009
Bacillus subtilis
brenda
Maekelae, M.R.; Hilden, K.; Lundell, T.K.
Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi
Appl. Microbiol. Biotechnol.
87
801-814
2010
Agaricus bisporus, Aspergillus niger, Aspergillus sp., Bacillus subtilis, Dichomitus squalens, Flammulina sp., Flammulina sp. IJF 140502, Flammulina velutipes, Pandorea sp., Pandorea sp. OXJ-11a, Phanerodontia chrysosporium, Trametes versicolor
brenda
Moral, M.E.; Tu, C.; Imaram, W.; Angerhofer, A.; Silverman, D.N.; Richards, N.G.
Nitric oxide reversibly inhibits Bacillus subtilis oxalate decarboxylase
Chem. Commun. (Camb. )
47
3111-3113
2011
Bacillus subtilis
brenda
Imaram, W.; Saylor, B.T.; Centonze, C.P.; Richards, N.G.; Angerhofer, A.
EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction
Free Radic. Biol. Med.
50
1009-1015
2011
Bacillus subtilis (O34714), Bacillus subtilis
brenda
Wolfenden, R.; Lewis, C.A.; Yuan, Y.
Kinetic challenges facing oxalate, malonate, acetoacetate, and oxaloacetate decarboxylases
J. Am. Chem. Soc.
133
5683-5685
2011
Bacillus subtilis
brenda
Lin, R.; Wu, R.; Huang, X.; Xie, T.
Immobilization of oxalate decarboxylase to Eupergit and properties of the immobilized enzyme
Prep. Biochem. Biotechnol.
41
154-165
2011
Bacillus subtilis
brenda
Saylor, B.T.; Reinhardt, L.A.; Lu, Z.; Shukla, M.S.; Nguyen, L.; Cleland, W.W.; Angerhofer, A.; Allen, K.N.; Richards, N.G.
A structural element that facilitates proton-coupled electron transfer in oxalate decarboxylase
Biochemistry
51
2911-2920
2012
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 (O34714)
brenda
Sasikumar, P.; Gomathi, S.; Anbazhagan, K.; Selvam, G.S.
Secretion of biologically active heterologous oxalate decarboxylase (OxdC) in Lactobacillus plantarum WCFS1 using homologous signal peptides
BioMed Res. Int.
2013
280432
2013
Bacillus subtilis
brenda
Winestrand, S.; Sjoede, A.; Cassland, P.; Hilden, L.; Nilvebrant, N.; Joensson, L.
Evaluation of oxalate decarboxylases in industrial bleaching filtrates and in pulp-mill experiments
Ind. Biotechnol.
10
126-129
2014
Aspergillus niger, uncultured fungus
-
brenda
Campomanes, P.; Kellett, W.F.; Easthon, L.M.; Ozarowski, A.; Allen, K.N.; Angerhofer, A.; Rothlisberger, U.; Richards, N.G.
Assigning the EPR fine structure parameters of the Mn(II) centers in Bacillus subtilis oxalate decarboxylase by site-directed mutagenesis and DFT/MM calculations
J. Am. Chem. Soc.
136
2313-2323
2014
Bacillus subtilis (O34714), Bacillus subtilis
brenda
Anbazhagan, K.; Sasikumar, P.; Gomathi, S.; Priya, H.P.; Selvam, G.S.
In vitro degradation of oxalate by recombinant Lactobacillus plantarum expressing heterologous oxalate decarboxylase
J. Appl. Microbiol.
115
880-887
2013
Bacillus subtilis
brenda
Karmakar, T.; Periyasamy, G.; Balasubramanian, S.
CO2 migration pathways in oxalate decarboxylase and clues about its active site
J. Phys. Chem. B
117
12451-12460
2013
Bacillus subtilis
brenda
da Silva, L.F.; Dias, C.V.; Cidade, L.C.; Mendes, J.S.; Pirovani, C.P.; Alvim, F.C.; Pereira, G.A.; Aragao, F.J.; Cascardo, J.C.; Costa, M.G.
Expression of an oxalate decarboxylase impairs the necrotic effect induced by Nep1-like protein (NLP) of Moniliophthora perniciosa in transgenic tobacco
Mol. Plant Microbe Interact.
24
839-848
2011
Flammulina velutipes
brenda
Chakraborty, N.; Ghosh, R.; Ghosh, S.; Narula, K.; Tayal, R.; Datta, A.; Chakraborty, S.
Reduction of oxalate levels in tomato fruit and consequent metabolic remodeling following overexpression of a fungal oxalate decarboxylase
Plant Physiol.
162
364-378
2013
Flammulina velutipes, no activity in Solanum lycopersicum
brenda
Twahir, U.T.; Ozarowski, A.; Angerhofer, A.
Redox cycling, pH dependence, and ligand effects of Mn(III) in oxalate decarboxylase from Bacillus subtilis
Biochemistry
55
6505-6516
2016
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 (O34714)
brenda
Zhu, W.; Reinhardt, L.A.; Richards, N.G.J.
Second-shell hydrogen bond impacts transition-state structure in Bacillus subtilis oxalate decarboxylase
Biochemistry
57
3425-3432
2018
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 (O34714)
brenda
Lee, E.; Jeong, B.C.; Park, Y.H.; Kim, H.H.
Expression of the gene encoding oxalate decarboxylase from Bacillus subtilis and characterization of the recombinant enzyme
BMC Res. Notes
7
598
2014
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 128 (O34714)
brenda
Sasikumar, P.; Gomathi, S.; Anbazhagan, K.; Baby, A.E.; Sangeetha, J.; Selvam, G.S.
Genetically engineered Lactobacillus plantarum WCFS1 constitutively secreting heterologous oxalate decarboxylase and degrading oxalate under in vitro
Curr. Microbiol.
69
708-715
2014
Lactiplantibacillus plantarum
brenda
Kotb, E.
Production, purification and partial characterization for an oxalate decarboxylase (OxDcase) from the probiote Lactobacillus plantarum KSK-II
Curr. Sci.
114
835-844
2018
Lactiplantibacillus plantarum, Lactiplantibacillus plantarum KSK-II
-
brenda
Twahir, U.T.; Stedwell, C.N.; Lee, C.T.; Richards, N.G.; Polfer, N.C.; Angerhofer, A.
Observation of superoxide production during catalysis of Bacillus subtilis oxalate decarboxylase at pH 4
Free Radic. Biol. Med.
80
59-66
2015
Bacillus subtilis (O34714), Bacillus subtilis, Bacillus subtilis 168 (O34714)
brenda
Sasikumar, P.; Gomathi, S.; Anbazhagan, K.; Abhishek, A.; Paul, E.; Vasudevan, V.; Sasikumar, S.; Selvam, G.S.
Recombinant Lactobacillus plantarum expressing and secreting heterologous oxalate decarboxylase prevents renal calcium oxalate stone deposition in experimental rats
J. Biomed. Sci.
21
86
2014
Lactiplantibacillus plantarum
brenda
Albert, A.; Tiwari, V.; Paul, E.; Ganesan, D.; Ayyavu, M.; Kujur, R.; Ponnusamy, S.; Shanmugam, K.; Saso, L.; Govindan Sadasivam, S.
Expression of heterologous oxalate decarboxylase in HEK293 cells confers protection against oxalate induced oxidative stress as a therapeutic approach for calcium oxalate stone disease
J. Enzyme Inhib. Med. Chem.
32
426-433
2017
Bacillus subtilis
brenda
Liang, X.; Moomaw, E.W.; Rollins, J.A.
Fungal oxalate decarboxylase activity contributes to Sclerotinia sclerotiorum early infection by affecting both compound appressoria development and function
Mol. Plant Pathol.
16
825-836
2015
Sclerotinia sclerotiorum, Sclerotinia sclerotiorum 1980
brenda
Koni, T.; Rusma, R.; Hanim, C.; Zupriza, Z.
Effect of pH and temperature on Bacillus subtilis FNCC 0059 oxalate decarboxylase activity
Pak. J. Biol. Sci.
20
436-441
2017
Bacillus subtilis, Bacillus subtilis FNCC 0059
-
brenda
Kumar, V.; Chattopadhyay, A.; Ghosh, S.; Irfan, M.; Chakraborty, N.; Chakraborty, S.; Datta, A.
Improving nutritional quality and fungal tolerance in soya bean and grass pea by expressing an oxalate decarboxylase
Plant Biotechnol. J.
14
1394-1405
2016
Flammulina velutipes
brenda