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Information on EC 3.1.4.17 - 3',5'-cyclic-nucleotide phosphodiesterase and Organism(s) Rattus norvegicus

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     3 Hydrolases
         3.1 Acting on ester bonds
             3.1.4 Phosphoric-diester hydrolases
                3.1.4.17 3',5'-cyclic-nucleotide phosphodiesterase
IUBMB Comments
Acts on 3',5'-cyclic AMP, 3',5'-cyclic dAMP, 3',5'-cyclic IMP, 3',5'-cyclic GMP and 3',5'-cyclic CMP.
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This record set is specific for:
Rattus norvegicus
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Word Map
The taxonomic range for the selected organisms is: Rattus norvegicus
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria, Archaea
Synonyms
pde4d, cyclic nucleotide phosphodiesterase, pde10a, camp phosphodiesterase, pde3a, pde3b, pde2a, camp-pde, phosphodiesterase 3, pde11a, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
3',5'-cyclic nucleoside monophosphate phosphodiesterase
-
-
-
-
3',5'-cyclonucleotide phosphodiesterase
-
-
-
-
3',5'-nucleotide phosphodiesterase
-
-
-
-
3':5'-CNP
-
-
-
-
3':5'-cyclic nucleotide 5'-nucleotidohydrolase
-
-
-
-
61 kDa Cam-PDE
-
-
-
-
63 kDa Cam-PDE
-
-
-
-
Ca2+/calmodulin-stimulated phosphodiesterase
-
-
Cam-PDE 1A
-
-
-
-
Cam-PDE 1B
-
-
-
-
Cam-PDE 1C
-
-
-
-
CGB-PDE
-
-
-
-
CGIP1
-
-
-
-
CGIPDE1
-
-
-
-
cGMP-binding cGMP-specific phosphodiesterase
-
-
-
-
CGS-PDE
-
-
-
-
cGSPDE
-
-
-
-
cyclic 3',5'-mononucleotide phosphodiesterase
-
-
-
-
cyclic 3',5'-nucleotide phosphodiesterase
-
-
-
-
cyclic 3',5'-phosphodiesterase
-
-
-
-
cyclic 3',5-nucleotide monophosphate phosphodiesterase
-
-
-
-
Cyclic GMP stimulated phosphodiesterase
-
-
-
-
cyclic nucleotide phosphodiesterase
-
-
-
-
cyclic nucleotide phosphodiesterase 10A
-
-
cyclic nucleotide phosphodiesterase 3B
-
-
DPDE1
-
-
-
-
DPDE2
-
-
-
-
DPDE3
-
-
-
-
DPDE4
-
-
-
-
Dunce protein
-
-
-
-
GMP-PDE alpha
-
-
-
-
GMP-PDE beta
-
-
-
-
GMP-PDE delta
-
-
-
-
GMP-PDE gamma
-
-
-
-
HCP1
-
-
-
-
High-affinity cAMP phosphodiesterase
-
-
-
-
Learning/ memory process protein
-
-
-
-
Low-affinity cAMP phosphodiesterase
-
-
-
-
MMPDE8
-
-
-
-
nucleoside 3',5'-cyclic phosphate diesterase
-
-
-
-
nucleoside-3',5-monophosphate phosphodiesterase
-
-
-
-
p17 protein
-
-
-
-
P2A
-
-
-
-
PDE V-B1
-
-
-
-
PDE V-C1
-
-
-
-
PDE10A
PDE21
-
-
-
-
PDE32
-
-
-
-
PDE43
-
-
-
-
PDE46
-
-
-
-
PDEase
-
-
-
-
PDEase regA
-
-
-
-
phosphodiesterase 1
-
-
phosphodiesterase 10A
-
-
phosphodiesterase 2
-
-
phosphodiesterase, cyclic 3',5'-nucleotide
-
-
-
-
phosphodiesterase-10A
-
-
phosphodiesterase-1B
-
-
TM22
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of phosphoric ester
-
-
-
-
PATHWAY SOURCE
PATHWAYS
SYSTEMATIC NAME
IUBMB Comments
3',5'-cyclic-nucleotide 5'-nucleotidohydrolase
Acts on 3',5'-cyclic AMP, 3',5'-cyclic dAMP, 3',5'-cyclic IMP, 3',5'-cyclic GMP and 3',5'-cyclic CMP.
CAS REGISTRY NUMBER
COMMENTARY hide
9040-59-9
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
3',5'-cAMP + H2O
5'-AMP
show the reaction diagram
-
-
-
-
?
3',5'-cGMP + H2O
5'-GMP
show the reaction diagram
cAMP + H2O
AMP
show the reaction diagram
-
-
-
?
cGMP + H2O
GMP
show the reaction diagram
-
-
-
?
guanosine 3',5'-cyclic phosphate + H2O
guanosine 5'-phosphate
show the reaction diagram
-
-
-
-
?
nucleoside 3',5'-cyclic phosphate + H2O
nucleoside 5'-phosphate
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
additional information
?
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-[[4-[4-pyridin-4-yl-1-(2,2, 2-trifluoroethyl)pyrazol-3-yl]phenoxy]methyl]quinoline succinic acid
5-(3-cyclopentyloxy-4-methoxy-phenyl)-pyrrolidin-2-one
-
50% inhibition at about 0.1 mM
BAY 60-7550
Cilostamide
-
50 mM, inhibits growth of acinar epithelial cells by 63%
dipyridamole
E4021
-
50% inhibition at about 0.0005-0.001 mM
erythro-9-(2-hydroxy-3-nonyl)adenine
-
50% inhibition at about 0.1 mM
isobutylmethylxanthine
Milrinone
-
50% inhibition at about 0.1 mM
nicardipine
-
weak inhibitor
papaverine
rolipram
SKF 94120
-
weak inhibitor
vardenafil
-
-
vinpocetine
-
50% inhibition at about 0.06-0.09 mM
zaprinast
additional information
-
-
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Ca2+
-
isoform PDE1, stimulation of both hydrolysis of cAMP and cGMP
Calmodulin
-
isoform PDE1, stimulation of both hydrolysis of cAMP and cGMP
clozapine
-
chronic treatment with 20 mg/kg clozapine increases PDE10A expression by 62%
haloperidol
lipopolysaccharide
-
expression and activity of isoforms PDE2, PDE3, PDE11 in cultured peritoneal macrophages are recovered after treatment of cultured cells with lipopolysaccharide. Lipopolysaccharide also up-regulates enzyme expression in resident peritoneal macrophages
additional information
-
not influenced by treatment with clozapine
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0001
3',5'-cGMP
-
-
0.002 - 0.004
cAMP
-
-
0.0013 - 0.0016
cGMP
-
-
additional information
additional information
-
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.000001
2-[[4-[4-pyridin-4-yl-1-(2,2, 2-trifluoroethyl)pyrazol-3-yl]phenoxy]methyl]quinoline succinic acid
Rattus norvegicus
-
the IC50 of the compound for inhibition of PDE10A in vitro is less than 1 nM
0.000036
papaverine
Rattus norvegicus
-
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
-
PDE 1 vascular expression is increased in arteries from angiotensin II hypertensive rats
Manually annotated by BRENDA team
-
age-related increases in isoforms PDE11A4, PDE8A3, PDE8A4/5, and PDE1C1 protein expression are confirmed in hippocampus of old versus young rodents. Relative to young rats, the hippocampi of old rats demonstrate strikingly decreased phosphorylation of GluR1, CaMKIIalpha, and CaMKIIbeta, decreased expression of the transmembrane AMPA regulatory proteins gamma2 (a.k.a. stargazin) and gamma8, and increased trimethylation of H3K27. Expression of isoforms of PDE11A4, and PDE1C1 correlate with these functional endpoints in young but not old rats
Manually annotated by BRENDA team
-
in freshly isolated peritoneal exudate macrophage, isoforms PDE1, PDE2, PDE3, PDE10, PDE11 are expressed. After 24h of cultures, levels of isoforms PDE2, PDE3, and PDE11 are markedly decreased. Their expression and activity are recovered after treatment of cultured cells with lipopolysaccharide
Manually annotated by BRENDA team
-
splice variant PDE1A is distributed in outer retina, especially in the outer segments of photoreceptors. Variant PDE1B is uniformly distributed across the retina, PDE1C is confined mainly to the inner retina with precise localization to the inner nuclear layer
Manually annotated by BRENDA team
cervical spinal cord, expression of isoforms PDE2, PDE5, and PDE9 in all lamina, in ventral motor neurons and in ependymal cells lining the central canal. Study on the influence of enzyme activity on NO-stimulated cGMP levels
Manually annotated by BRENDA team
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
PDE3B is associated with caveola in primary adipocytes
Manually annotated by BRENDA team
-
enzyme isoform PDE1A is predominantly cytoplasmic in medial contractile vascular smoth muscle cell and nuclear in neointimal synthetic vascular smoth muscle cell. Nuclear enzyme isoform PDE1A is important in vascular smoth muscle cell growth and survival
Manually annotated by BRENDA team
-
about 90% of total activity
-
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
-
phosphodiesterase-1 inhibition decreases vascular contraction in arteries from angiotensin II hypertensive, but not control, rats. The inhibition of PDE1 in smooth muscle cells isolated from normal aorta or from atherosclerotic lesions results in suppression of smooth muscle cell proliferation
physiological function
-
when Ca2 is high, PDE1 is activated, resulting in lower levels of cGMP, which theoretically facilitates the smooth muscle cell contraction
additional information
-
three different isoforms of calmodulin-dependent PDE isoforms are reported, PDE1A and PDE1B, which display higher affinity to hydrolyze cGMP compared to cAMP, and PDE1C, which has a similar ability to hydrolyze cGMP and cAMP
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
PDE10_RAT
794
0
90161
Swiss-Prot
other Location (Reliability: 2)
PDE2A_RAT
928
0
104664
Swiss-Prot
Secretory Pathway (Reliability: 2)
PDE3A_RAT
1141
5
124301
Swiss-Prot
other Location (Reliability: 3)
PDE3B_RAT
1108
5
123107
Swiss-Prot
other Location (Reliability: 2)
PDE1B_RAT
535
0
61260
Swiss-Prot
other Location (Reliability: 1)
PDE1C_RAT
768
0
86671
Swiss-Prot
other Location (Reliability: 2)
Q8VIE3_RAT
359
0
41456
TrEMBL
other Location (Reliability: 3)
PDE4A_RAT
844
0
93439
Swiss-Prot
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
60000
-
SDS-PAGE
63000
-
x * 63000, splice variant PDE1B, x * 74000 and x * 70000, splice variant PDE1C, x * 79000, splice variant PDE1A
70000
-
x * 63000, splice variant PDE1B, x * 74000 and x * 70000, splice variant PDE1C, x * 79000, splice variant PDE1A
74000
79000
-
x * 63000, splice variant PDE1B, x * 74000 and x * 70000, splice variant PDE1C, x * 79000, splice variant PDE1A
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
-
x * 63000, splice variant PDE1B, x * 74000 and x * 70000, splice variant PDE1C, x * 79000, splice variant PDE1A
additional information
-
nuclear and cytoplasmic enzyme isoform PDE1A are associated with contractile marker SM-calponin and growth marker Ki-67, respectively
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
decrease in enzyme activity by RNAi results in significantly attenuated vascular smoth muscle cell growth by decreasing proliferation via G1 arrest and inducing apoptosis. Application of RNAi also leads to intracellular cGMP elevation, p27Kip1 upregulation, cyclin D1 downregulation, and p53 activation
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in COS-1 cells
-
expression in NIH3006 murine fibroblasts and Sf9 insect cells
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
angiotensin II is able to increase PDE1 expression in vascular smooth muscle cells
-
isoforms PDE1B, PDE1C, PDE2A, PDE4A, PDE4D, PDE5A, PDE7A, PDE8A, PDE8B, PDE10A, and PDE11A show an age-related increase or decrease in mRNA expression in at least 1 of the 4 brain regions examined (hippocampus, cortex, striatum, and cerebellum). mRNA expression of isoforms PDE1A, PDE3A, PDE3B, PDE4B, PDE7A, PDE7B, and PDE9A does not change with age
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
molecular biology
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Purvis, K.; Rui, H.
High-affinity, calmodulin-dependent isoforms of cyclic nucleotide phosphodiesterase in rat testis
Methods Enzymol.
159
675-685
1988
Rattus norvegicus
Manually annotated by BRENDA team
Hansen, R.S.; Charbonneau, H.; Beavo, J.A.
Purification of calmodulin-stimulated cyclic nucleotide phosphodiesterase by monoclonal antibody affinity chromatography
Methods Enzymol.
159
543-557
1988
Bos taurus, Rattus norvegicus
Manually annotated by BRENDA team
Yan, C.; Zhao, A.Z.; Bentley, J.K.; Lougney, K.; Ferguson, K.; Beavo, J.A.
Molecular cloning and characterization of a calmodulin-dependent phosphodiesterase enriched in olfactory sensory neurons
Proc. Natl. Acad. Sci. USA
92
9677-9681
1995
Rattus norvegicus
Manually annotated by BRENDA team
Leroy, M.J.; Degerman, E.; Taira, M.; Murata, T.; Wang, L.H.; Movsesian, M.A.; Meacci, E.; Manganiello, V.C.
Characterization of two recombinant PDE3 (cGMP inhibited cyclic nucleotide phosphodiesterase) isoforms, RcGIP1 and HcGIP2, expressed in NIH 3006 murine fibroblasts and Sf9 insect cells
Biochemistry
35
10194-10202
1996
Homo sapiens, Rattus norvegicus
Manually annotated by BRENDA team
Mukai, J.; Asai, T.; Naka, M.; Tanaka, T.
Separation and characterization of a novel isoenzyme of cyclic nucleotide phosphodiesterase from rat cerebrum
Br. J. Pharmacol.
111
389-390
1994
Rattus norvegicus
Manually annotated by BRENDA team
Fujishige, K.; Kotera, J.; Omori, K.
Striatum- and testis-specific phosphodiesterase PDE10A. Isolation and characterization of a rat PDE10A
Eur. J. Biochem.
266
1118-1127
1999
Rattus norvegicus
Manually annotated by BRENDA team
Murata, T.; Sugatani, T.; Tagawa, T.
Expression of phosphodiesterase 3 in rat submandibular gland
Arch. Oral Biol.
45
1043-1047
2000
Rattus norvegicus
Manually annotated by BRENDA team
Murata, T.; Sugatani, T.; Manganiello, V.C.; Shimizu, K.; Tagawa, T.
Expression of phosphodiesterase 3 in rat submandibular gland cell lines
Arch. Oral Biol.
46
453-457
2001
Rattus norvegicus
Manually annotated by BRENDA team
Tanaka, S.; Shimooka, S.; Shimomura, H.
Changes in phosphodiesterase activity in the developing rat submandibular gland
Arch. Oral Biol.
47
567-576
2002
Rattus norvegicus
Manually annotated by BRENDA team
Yuasa, K.; Ohgaru, T.; Asahina, M.; Omori, K.
Identification of rat cyclic nucleotide phosphodiesterase 11A (PDE11A). Comparison of rat and human PDE11A splicing variants
Eur. J. Biochem.
268
4440-4448
2001
Rattus norvegicus
Manually annotated by BRENDA team
Nilsson, R.; Ahmad, F.; Sward, K.; Andersson, U.; Weston, M.; Manganiello, V.; Degerman, E.
Plasma membrane cyclic nucleotide phosphodiesterase 3B (PDE3B) is associated with caveolae in primary adipocytes
Cell. Signal.
18
1713-1721
2006
Rattus norvegicus
Manually annotated by BRENDA team
Keravis, T.; Thaseldar-Roumie, R.; Lugnier, C.
Assessment of phosphodiesterase isozyme contribution in cell and tissue extracts
Methods Mol. Biol.
307
63-74
2005
Rattus norvegicus
Manually annotated by BRENDA team
Yan, C.
Determination of Ca2+/calmodulin-stimulated phosphodiesterase activity in intact cells
Methods Mol. Biol.
307
85-92
2005
Rattus norvegicus
Manually annotated by BRENDA team
Witwicka, H.; Kobialka, M.; Siednienko, J.; Mitkiewicz, M.; Gorczyca, W.A.
Expression and activity of cGMP-dependent phosphodiesterases is up-regulated by lipopolysaccharide (LPS) in rat peritoneal macrophages
Biochim. Biophys. Acta
1773
209-218
2007
Rattus norvegicus
Manually annotated by BRENDA team
Nagel, D.J.; Aizawa, T.; Jeon, K.I.; Liu, W.; Mohan, A.; Wei, H.; Miano, J.M.; Florio, V.A.; Gao, P.; Korshunov, V.A.; Berk, B.C.; Yan, C.
Role of nuclear Ca2+/calmodulin-stimulated phosphodiesterase 1A in vascular smooth muscle cell growth and survival
Circ. Res.
98
777-784
2006
Rattus norvegicus
Manually annotated by BRENDA team
Rutten, K.; Prickaerts, J.; Hendrix, M.; van der Staay, F.J.; Sik, A.; Blokland, A.
Time-dependent involvement of cAMP and cGMP in consolidation of object memory: studies using selective phosphodiesterase type 2, 4 and 5 inhibitors
Eur. J. Pharmacol.
558
107-112
2007
Rattus norvegicus
Manually annotated by BRENDA team
de Vente, J.; Markerink-van Ittersum, M.; Vles, J.S.
The role of phosphodiesterase isoforms 2, 5, and 9 in the regulation of NO-dependent and NO-independent cGMP production in the rat cervical spinal cord
J. Chem. Neuroanat.
31
275-303
2006
Rattus norvegicus (Q01062)
Manually annotated by BRENDA team
Santone, R.; Giorgi, M.; Maccarone, R.; Basso, M.; Deplano, S.; Bisti, S.
Gene expression and protein localization of calmodulin-dependent phosphodiesterase in adult rat retina
J. Neurosci. Res.
84
1020-1026
2006
Rattus norvegicus
Manually annotated by BRENDA team
Siuciak, J.A.
The role of phosphodiesterases in schizophrenia: therapeutic implications
CNS Drugs
22
983-993
2008
Homo sapiens, Rattus norvegicus
Manually annotated by BRENDA team
van Donkelaar, E.L.; Rutten, K.; Blokland, A.; Akkerman, S.; Steinbusch, H.W.; Prickaerts, J.
Phosphodiesterase 2 and 5 inhibition attenuates the object memory deficit induced by acute tryptophan depletion
Eur. J. Pharmacol.
600
98-104
2008
Rattus norvegicus
Manually annotated by BRENDA team
Schmidt, C.J.; Chapin, D.S.; Cianfrogna, J.; Corman, M.L.; Hajos, M.; Harms, J.F.; Hoffman, W.E.; Lebel, L.A.; McCarthy, S.A.; Nelson, F.R.; Proulx-LaFrance, C.; Majchrzak, M.J.; Ramirez, A.D.; Schmidt, K.; Seymour, P.A.; Siuciak, J.A.; Tingley, F.D.; Williams, R.D.; Verhoest, P.R.; Menniti, F.S.
Preclinical characterization of selective phosphodiesterase 10A inhibitors: a new therapeutic approach to the treatment of schizophrenia
J. Pharmacol. Exp. Ther.
325
681-690
2008
Rattus norvegicus
Manually annotated by BRENDA team
Threlfell, S.; Sammut, S.; Menniti, F.S.; Schmidt, C.J.; West, A.R.
Inhibition of phosphodiesterase 10A increases the responsiveness of striatal projection neurons to cortical stimulation
J. Pharmacol. Exp. Ther.
328
785-795
2009
Rattus norvegicus
Manually annotated by BRENDA team
Dlaboga, D.; Hajjhussein, H.; ODonnell, J.M.
Chronic haloperidol and clozapine produce different patterns of effects on phosphodiesterase-1B, -4B, and -10A expression in rat striatum
Neuropharmacology
54
745-754
2008
Rattus norvegicus
Manually annotated by BRENDA team
Giachini, F.R.; Lima, V.V.; Carneiro, F.S.; Tostes, R.C.; Webb, R.C.
Decreased cGMP level contributes to increased contraction in arteries from hypertensive rats: role of phosphodiesterase 1
Hypertension
57
655-663
2011
Rattus norvegicus, Rattus norvegicus Sprague-Dawley
Manually annotated by BRENDA team
Kelly, M.P.; Adamowicz, W.; Bove, S.; Hartman, A.J.; Mariga, A.; Pathak, G.; Reinhart, V.; Romegialli, A.; Kleiman, R.J.
Select 3,5-cyclic nucleotide phosphodiesterases exhibit altered expression in the aged rodent brain
Cell. Signal.
26
383-397
2014
Mus musculus, Rattus norvegicus
Manually annotated by BRENDA team