Reference on EC 3.1.21.5 - type III site-specific deoxyribonuclease
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Roberts, R.J.
Restriction enzymes and their isoschizomers
Nucleic Acids Res.
18
2331-2365
1990
Escherichia coli, Haemophilus influenzae, Salmonella enterica subsp. enterica serovar Typhi
Roberts, R.J.
Restriction and modification enzymes and their recognition sequences
Nucleic Acids Res.
11
r135-r167
1983
Escherichia coli
Roberts, R.J.; Macelis, D.
REBASE - restriction enzymes and methylases
Nucleic Acids Res.
29
268-269
2001
Escherichia coli
Kruger, D.H.; Kupper, D.; Meisel, A.; Tierlich, M.; Reuter, M.; Schroeder, C.
Restriction endonucleases functionally interacting with two DNA sites
Gene
157
165
1995
Escherichia coli
Gorbalenya, A.E.; Koonin, E.V.
Endonuclease (R) subunit of type-I and type-III restriction-modification enzymes contain a helicase-like domain
FEBS Lett.
291
277-281
1991
Escherichia coli
Kunz, A.; Mackeldanz, P.; Mucke, M.; Meisel, A.; Reuter, M.; Schroeder, C.; Kruger, D.H.
Mutual activation of two restriction endonucleases: interaction of EcoP1 and EcoP15
Biol. Chem.
379
617-620
1998
Escherichia coli
Su, P.; Im, H.; Hsieh, H.; Kang'a, S.; Dunn, N.W.
LlaFI, a type III restriction and modification system in Lactococcus lactis
Appl. Environ. Microbiol.
65
686-693
1999
Lactococcus lactis
Meisel, A.; Bickle, T.A.; Kruger, T.A.; Kruger, D.H.; Schroeder, C.
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage
Nature
355
467-469
1992
Escherichia coli
Meisel, A.; Mackeldanz, P.; Bickle, T.A.; Kruger, D.H.; Schroeder, C.
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
EMBO J.
14
2958-2966
1995
Escherichia coli
Saha, S.; Rao, D.N.
Mutations in the Res subunit of the EcoPI restriction enzyme that affect ATP-dependent reactions
J. Mol. Biol.
269
342-354
1997
Escherichia coli
Hegna, I.K.; Bratland, H.; Kolsto, A.B.
BceS1, a new addition to the type III restriction and modification family
FEMS Microbiol. Lett.
202
189-193
2001
Bacillus cereus (P25241)
Janscak, P.; Sandmeier, U.; Szczelkun, M.D.; Bickle, T.A.
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I
J. Mol. Biol.
306
417-431
2001
Escherichia coli, prophage P1
Bist, P.; Sistla, S.; Krishnamurthy, V.; Acharya, A.; Chandrakala, B.; Rao, D.N.
S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes
J. Mol. Biol.
310
93-109
2001
Escherichia coli
Mucke, M.; Reich, S.; Moncke-Buchner, E.; Reuter, M.; Kruger, D.H.
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sites
J. Mol. Biol.
312
687-698
2001
Escherichia coli
Peakman, L.J.; Antognozzi, M.; Bickle, T.A.; Janscak, P.; Szczelkun, M.D.
S-adenosyl methionine prevents promiscuous DNA cleavage by the EcoP1I type III restriction enzyme
J. Mol. Biol.
333
321-335
2003
prophage P1
Reich, S.; Gossl, I.; Reuter, M.; Rabe, J.P.; Kruger, D.H.
Scanning force microscopy of DNA translocation by the type III restriction enzyme EcoP15I
J. Mol. Biol.
341
337-343
2004
Escherichia coli
Dryden, D.T.; Murray, N.E.; Rao, D.N.
Nucleoside triphosphate-dependent restriction enzymes
Nucleic Acids Res.
29
3728-3741
2001
Escherichia coli
Handa, N.; Kobayashi, I.
Type III restriction is alleviated by bacteriophage (RecE) homologous recombination function but enhanced by bacterial (RecBCD) function
J. Bacteriol.
187
7362-7373
2005
Escherichia coli
Mncke-Buchner, E.; Mackeldanz, P.; Kruger, D.H.; Reuter, M.
Overexpression and affinity chromatography purification of the Type III restriction endonuclease EcoP15I for use in transcriptome analysis
J. Biotechnol.
114
99-106
2004
Escherichia coli
Peakman, L.J.; Szczelkun, M.D.
DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping
Nucleic Acids Res.
32
4166-4174
2004
Escherichia coli
Raghavendra, N.K.; Rao, D.N.
Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme
Nucleic Acids Res.
32
5703-5711
2004
Escherichia coli
Sears, A.; Szczelkun, M.D.
Subunit assembly modulates the activities of the Type III restriction-modification enzyme PstII in vitro
Nucleic Acids Res.
33
4788-4796
2005
Providencia stuartii, Providencia stuartii 164
Crampton, N.; Roes, S.; Dryden, D.T.; Rao, D.N.; Edwardson, J.M.; Henderson, R.M.
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes
EMBO J.
26
3815-3825
2007
Escherichia coli, Escherichia coli P15I
Wagenfuehr, K.; Pieper, S.; Mackeldanz, P.; Linscheid, M.; Krueger, D.H.; Reuter, M.
Structural domains in the type III restriction endonuclease EcoP15I: characterization by limited proteolysis, mass spectrometry and insertional mutagenesis
J. Mol. Biol.
366
93-102
2007
Escherichia coli
Fox, K.L.; Dowideit, S.J.; Erwin, A.L.; Srikhanta, Y.N.; Smith, A.L.; Jennings, M.P.
Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression
Nucleic Acids Res.
35
5242-5252
2007
Haemophilus influenzae
Crampton, N.; Yokokawa, M.; Dryden, D.T.; Edwardson, J.M.; Rao, D.N.; Takeyasu, K.; Yoshimura, S.H.; Henderson, R.M.
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping
Proc. Natl. Acad. Sci. USA
104
12755-12760
2007
Escherichia coli
Neely, R.K.; Roberts, R.J.
The BsaHI restriction-modification system: cloning, sequencing and analysis of conserved motifs
BMC Mol. Biol.
9
48
2008
Geobacillus stearothermophilus (B0LX59)
Moencke-Buchner, E.; Rothenberg, M.; Reich, S.; Wagenfuehr, K.; Matsumura, H.; Terauchi, R.; Krueger, D.H.; Reuter, M.
Functional characterization and modulation of the DNA cleavage efficiency of type III restriction endonuclease EcoP15I in its interaction with two sites in the DNA target
J. Mol. Biol.
387
1309-1319
2009
Escherichia coli
Carpenter, M.A.; Bhagwat, A.S.
DNA base flipping by both members of the PspGI restriction-modification system
Nucleic Acids Res.
36
5417-5425
2008
Pyrococcus sp. GI-H
Ramanathan, S.P.; van Aelst, K.; Sears, A.; Peakman, L.J.; Diffin, F.M.; Szczelkun, M.D.; Seidel, R.
Type III restriction enzymes communicate in 1D without looping between their target sites
Proc. Natl. Acad. Sci. USA
106
1748-1753
2009
Escherichia coli
Adamczyk-Poplawska, M.; Lower, M.; Piekarowicz, A.
Characterization of the NgoAXP: phase-variable type III restriction-modification system in Neisseria gonorrhoeae
FEMS Microbiol. Lett.
300
25-35
2009
Neisseria gonorrhoeae (Q5F957), Neisseria gonorrhoeae
Schwarz, F.W.; van Aelst, K.; Toth, J.; Seidel, R.; Szczelkun, M.D.
DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion
Nucleic Acids Res.
39
8042-8051
2011
Escherichia coli
Corvaglia, A.R.; Francois, P.; Hernandez, D.; Perron, K.; Linder, P.; Schrenzel, J.
A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains
Proc. Natl. Acad. Sci. USA
107
11954-11958
2010
Escherichia coli, Staphylococcus aureus
Van Aelst, K.; Toth, J.; Ramanathan, S.; Schwarz, F.; Seidel, R.; Szczelkun, M.
Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat
Proc. Natl. Acad. Sci. USA
107
9123-9128
2010
Escherichia coli
Gupta, Y.K.; Yang, L.; Chan, S.H.; Samuelson, J.C.; Xu, S.Y.; Aggarwal, A.K.
Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering
J. Mol. Biol.
420
261-268
2012
Escherichia coli
Toth, J.; van Aelst, K.; Salmons, H.; Szczelkun, M.D.
Dissociation from DNA of Type III Restriction-Modification enzymes during helicase-dependent motion and following endonuclease activity
Nucleic Acids Res.
40
6752-6764
2012
Escherichia coli
Rao, D.N.; Dryden, D.T.; Bheemanaik, S.
Type III restriction-modification enzymes: a historical perspective
Nucleic Acids Res.
42
45-55
2014
Bacillus cereus, Escherichia coli, Haemophilus influenzae, Helicobacter pylori, Lactococcus lactis, Mannheimia haemolytica, Neisseria gonorrhoeae, Providencia stuartii, Salmonella enterica subsp. enterica serovar Typhimurium, Escherichia coli 15T-
Butterer, A.; Pernstich, C.; Smith, R.M.; Sobott, F.; Szczelkun, M.D.; Toth, J.
Type III restriction endonucleases are heterotrimeric: comprising one helicase-nuclease subunit and a dimeric methyltransferase that binds only one specific DNA
Nucleic Acids Res.
42
5139-5150
2014
Escherichia coli, Providencia stuartii
Algire, M.A.; Montague, M.G.; Vashee, S.; Lartigue, C.; Merryman, C.
A type III restriction-modification system in Mycoplasma mycoides subsp. capri
Open Biology
2
120115
2012
Mycoplasma mycoides subsp. capri, Mycoplasma mycoides subsp. capri GM12
Schwarz, F.W.; Toth, J.; van Aelst, K.; Cui, G.; Clausing, S.; Szczelkun, M.D.; Seidel, R.
The helicase-like domains of type III restriction enzymes trigger long-range diffusion along DNA
Science
340
353-356
2013
Escherichia coli
Toth, J.; Bollins, J.; Szczelkun, M.D.
Re-evaluating the kinetics of ATP hydrolysis during initiation of DNA sliding by Type III restriction enzymes
Nucleic Acids Res.
43
10870-10881
2015
Punavirus P1 (P08764), Escherichia coli (P12364)
Anjum, A.; Brathwaite, K.J.; Aidley, J.; Connerton, P.L.; Cummings, N.J.; Parkhill, J.; Connerton, I.; Bayliss, C.D.
Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168
Nucleic Acids Res.
44
4581-4594
2016
Campylobacter jejuni (Q0PC94), Campylobacter jejuni NCTC 11168 (Q0PC94)
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