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acetyltransferase, histone
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ELONGATA3
component of the elongator complex
enhancer-of-asymmetric leaves-two1
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factor acetyltransferase
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enzyme form A is also able to acetylate nonhistone proteins, mostly transcription factors, overview
FAT
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when acetylating nonhistone transcription factor proteins, factor specific, overview
general control non-repressed protein5
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histone acetokinase
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histone acetylase
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histone acetyltransferase
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histone acetyltransferase AtGCN5
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-
histone transacetylase
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nucleosome-histone acetyltransferase
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HAM1
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HAM2
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additional information
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GCN5 belongs to the HAT family of enzymes
additional information
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the enzyme belongs to the MYST family histone acetyltransferases which is divided in three sub-families, overview
additional information
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type A enzymes are localized in the nuclei and acetylate nucleosomal histones as well as nonhistone proteins, type B enzymes can be found in the cytoplasmic fraction and are responsible for acetylation of newly synthesized histones before their translocation into the nucleus for chromatin assembly during DNA replication
additional information
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type A enzymes can be grouped into different families based on amino acid sequence comparison and binding motifs, overview
additional information
the enzyme belongs to the MYST histone acetyltransferase family
additional information
the enzyme belongs to the MYST histone acetyltransferase family
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acetyl-CoA + histone
CoA + acetylhistone
acetyl-CoA + histone H
CoA + acetylhistone H
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histone acetyltransferase AtGCN5 is required to regulate the floral meristem activity through the WUS/AG pathway
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?
acetyl-CoA + histone H3
CoA + acetylhistone H3
acetyl-CoA + histone H4
CoA + acetylhistone H4
acetyl-CoA + [histone H3]-L-lysine14
CoA + [histone H3]-N6-acetyl-L-lysine14
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-
-
?
acetyl-CoA + [histone H3]-L-lysine9
CoA + [histone H3]-N6-acetyl-L-lysine9
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-
-
-
?
histone + acetyl-CoA
acetyl-histone + CoA
additional information
?
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acetyl-CoA + histone
CoA + acetylhistone
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-
-
r
acetyl-CoA + histone
CoA + acetylhistone
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histone H3 is the preferred substrate
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r
acetyl-CoA + histone H3
CoA + acetylhistone H3
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residues K14, K18, and K23 of H3 are acetylated by domain C1 of isoform Idm1 in vitro
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?
acetyl-CoA + histone H3
CoA + acetylhistone H3
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Gcn5 protein: preferred substrate, acetylation at Lys14
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r
acetyl-CoA + histone H3
CoA + acetylhistone H3
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acetylation at Lys9
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-
?
acetyl-CoA + histone H3
CoA + acetylhistone H3
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acetylation at Lys14 of histone H3
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-
?
acetyl-CoA + histone H4
CoA + acetylhistone H4
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Gcn5 protein acetylates H4 when purified and presented separately to the enzyme at Lys8 and Lys16
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r
acetyl-CoA + histone H4
CoA + acetylhistone H4
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acetylation at Lys14
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?
histone + acetyl-CoA
acetyl-histone + CoA
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?
histone + acetyl-CoA
acetyl-histone + CoA
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histone acetylation is an important posttranslational modification correlated with gene activation, the HAC1 is involved in the regulation of flowering time via repression of flowering locus C, the enzyme participates in many physiological processes, including proliferation, differentiation, and apoptosis
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?
additional information
?
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Gcn5 is a coactivator of transcription
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?
additional information
?
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Gcn5 and PCAF protein are transcription cofactors
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?
additional information
?
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affects the inflorescence meristem and stamen development in Arabidopsis thaliana
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?
additional information
?
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histone acetylation and deacetylation is an epigenetic mechanism in volved in regulation of mIRNA production. GCN5 has a general repressive effect on microRNAs, miRNAs, and it targets a subset of MIRNA genes, GCN5 is required for acetylation of histone H3 lysine 14 at these loci, overview
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?
additional information
?
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isoform GCN5 is not the enzyme responsible for histone acetylation at cold-regulated genes COR promoters during cold acclimation
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?
additional information
?
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GCN5 directly targets HSFA3 and UVH6 and affects their H3K9 and H3K14 acetylation levels
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?
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acetyl-CoA + histone
CoA + acetylhistone
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histone H3 is the preferred substrate
-
r
acetyl-CoA + histone H
CoA + acetylhistone H
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histone acetyltransferase AtGCN5 is required to regulate the floral meristem activity through the WUS/AG pathway
-
-
?
acetyl-CoA + histone H3
CoA + acetylhistone H3
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acetylation at Lys9
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?
acetyl-CoA + histone H4
CoA + acetylhistone H4
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acetylation at Lys14
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?
acetyl-CoA + [histone H3]-L-lysine14
CoA + [histone H3]-N6-acetyl-L-lysine14
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?
acetyl-CoA + [histone H3]-L-lysine9
CoA + [histone H3]-N6-acetyl-L-lysine9
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-
-
-
?
histone + acetyl-CoA
acetyl-histone + CoA
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histone acetylation is an important posttranslational modification correlated with gene activation, the HAC1 is involved in the regulation of flowering time via repression of flowering locus C, the enzyme participates in many physiological processes, including proliferation, differentiation, and apoptosis
-
-
?
additional information
?
-
additional information
?
-
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affects the inflorescence meristem and stamen development in Arabidopsis thaliana
-
-
?
additional information
?
-
-
histone acetylation and deacetylation is an epigenetic mechanism in volved in regulation of mIRNA production. GCN5 has a general repressive effect on microRNAs, miRNAs, and it targets a subset of MIRNA genes, GCN5 is required for acetylation of histone H3 lysine 14 at these loci, overview
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?
additional information
?
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isoform GCN5 is not the enzyme responsible for histone acetylation at cold-regulated genes COR promoters during cold acclimation
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?
additional information
?
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GCN5 directly targets HSFA3 and UVH6 and affects their H3K9 and H3K14 acetylation levels
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-
?
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evolution
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the Arabidopsis genome contains 12 histone acetyltransferase genes
malfunction
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loss of function of the Arabidopsis histone acetyltransferase GCN5 results in serious defects in terms of thermotolerance, and considerably impairs the transcriptional activation of heat stress-responsive genes. The expression of several key regulators such as the heat stress transcription factors HSFA2 and HSFA3, multiprotein bridging factor 1c (MBF1c) and UV-hypersensitive 6 (UVH6) is downregulated in the gcn5 mutant under heat stress compared with the wild-type. The GCN5 mutation affects H3K9 and H3K14 acetylation of HSFA3 and UVH6 genes under heat stress. Overexpression of the Triticum aestivum TaGCN5 gene restores thermotolerance in Arabidopsis gcn5 mutant plants
physiological function
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GCN5 has a general repressive effect on microRNAs, miRNAs, that guide sequence-specific posttranscriptional gene silencing, but is required for expression of a subset of MIRNA genes, overview
physiological function
isoform IDM1is a regulator of DNA demethylation. IDM1 is required for preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences that are normally targeted for active DNA demethylation by Repressor of Silencing 1 and related 5-methylcytosine DNA glycosylases. IDM1 binds methylated DNA at chromatin sites lacking histone H3K4 di- or trimethylation and acetylates H3 to create a chromatin environment permissible for 5-methylcytosine DNA glycosylases to function
physiological function
plants homozygous for T-DNA disruption alleles of GCN5 encoding a histone acetyltransferase show diminished expression of cold-regulated genes COR during cold acclimation. H3 acetylation at COR gene promoters is stimulated upon cold acclimation in gcn5 plants as in wild type plants, but the decrease in nucleosome occupancy is diminished. Thus, GCN5 is not the enzyme responsible for histone acetylation at COR gene promoters during cold acclimation
physiological function
protein mediates establishment of leaf polarity independently of ASYMMETRIC LEAVES2 and the trans-acting small interfering RNA-related pathway. Treatment with an inhibitor of histone deacetylases causes additive polarity defects in as2-1 east1-1 mutant plants. Isoform ELO3 may be involved, independent of the HDAC pathway, in the determination of polarity
physiological function
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GCN5 is an important histone acetyltransferase that is required for gene expression changes involved in numerous plant development pathways and responses to environmental conditions in Arabidopsis. Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis thaliana
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HAC12_ARATH
1706
0
190272
Swiss-Prot
Mitochondrion (Reliability: 5)
HAC1_ARATH
1697
0
190045
Swiss-Prot
Chloroplast (Reliability: 4)
HAC2_ARATH
1367
0
155772
Swiss-Prot
other Location (Reliability: 4)
HAC4_ARATH
1470
0
166802
Swiss-Prot
Chloroplast (Reliability: 3)
HAC5_ARATH
1670
0
188188
Swiss-Prot
Mitochondrion (Reliability: 5)
MCC1_ARATH
247
0
28306
Swiss-Prot
other Location (Reliability: 2)
GCN5_ARATH
568
0
63124
Swiss-Prot
Chloroplast (Reliability: 2)
MYST1_ARATH
445
0
51438
Swiss-Prot
other Location (Reliability: 5)
MYST2_ARATH
445
0
51367
Swiss-Prot
Chloroplast (Reliability: 4)
HATB_ARATH
467
0
52738
Swiss-Prot
other Location (Reliability: 4)
MBD9_ARATH
2176
0
240431
Swiss-Prot
other Location (Reliability: 2)
Q8LFM6_ARATH
128
0
14475
TrEMBL
other Location (Reliability: 2)
A0A178VL29_ARATH
568
0
63124
TrEMBL
Chloroplast (Reliability: 2)
A0A654GE09_ARATH
445
0
51438
TrEMBL
other Location (Reliability: 5)
F4I4I8_ARATH
1677
0
187091
TrEMBL
Mitochondrion (Reliability: 5)
A0A654ECF9_ARATH
128
0
14475
TrEMBL
other Location (Reliability: 2)
A0A7G2E5X7_ARATH
1834
0
204762
TrEMBL
Chloroplast (Reliability: 4)
A0A1I9LPG3_ARATH
1589
0
179302
TrEMBL
other Location (Reliability: 3)
A0A7G2FKH0_ARATH
467
0
52688
TrEMBL
other Location (Reliability: 4)
A0A178W5M6_ARATH
1680
0
187454
TrEMBL
Mitochondrion (Reliability: 5)
A0A178UIX7_ARATH
270
0
30835
TrEMBL
other Location (Reliability: 5)
A0A5S9WVM3_ARATH
1697
0
190022
TrEMBL
Chloroplast (Reliability: 4)
A0A5S9WMR7_ARATH
1470
0
166817
TrEMBL
Chloroplast (Reliability: 2)
A0A1I9LNJ6_ARATH
177
0
20218
TrEMBL
Secretory Pathway (Reliability: 3)
A0A654F6L1_ARATH
1670
0
188188
TrEMBL
Mitochondrion (Reliability: 5)
A0A1P8ARV7_ARATH
1641
0
183631
TrEMBL
Mitochondrion (Reliability: 5)
A0A178WJZ4_ARATH
1697
0
190045
TrEMBL
Chloroplast (Reliability: 4)
A0A178UAU6_ARATH
445
0
51437
TrEMBL
Chloroplast (Reliability: 5)
Q6NLS5_ARATH
270
0
30835
TrEMBL
other Location (Reliability: 5)
A0A1P8ARV8_ARATH
1680
0
187425
TrEMBL
Mitochondrion (Reliability: 5)
A0A654FZP0_ARATH
445
0
51357
TrEMBL
Chloroplast (Reliability: 4)
A0A7G2E4A1_ARATH
1387
0
157474
TrEMBL
other Location (Reliability: 2)
A0A178VBT3_ARATH
265
0
30241
TrEMBL
other Location (Reliability: 2)
Q9LFD8_ARATH
273
0
31318
TrEMBL
other Location (Reliability: 5)
A0A654EIU4_ARATH
1456
0
165000
TrEMBL
Chloroplast (Reliability: 2)
A0A1P8AQG0_ARATH
1456
0
165070
TrEMBL
Chloroplast (Reliability: 3)
Q9FWQ4_ARATH
238
0
27025
TrEMBL
other Location (Reliability: 2)
A0A178VGI0_ARATH
1410
0
158220
TrEMBL
Mitochondrion (Reliability: 5)
D6BJH9_ARATH
107
0
12285
TrEMBL
other Location (Reliability: 3)
A0A1P8BFL5_ARATH
432
0
48910
TrEMBL
other Location (Reliability: 1)
A0A654EAH3_ARATH
1680
0
187395
TrEMBL
Mitochondrion (Reliability: 5)
A0A178U8L6_ARATH
445
0
51367
TrEMBL
Chloroplast (Reliability: 4)
F4IDH2_ARATH
1741
0
195169
TrEMBL
Chloroplast (Reliability: 4)
A0A178UGY7_ARATH
273
0
31318
TrEMBL
other Location (Reliability: 5)
A0A178W519_ARATH
1470
0
166803
TrEMBL
Chloroplast (Reliability: 2)
A0A178VE69_ARATH
282
0
32631
TrEMBL
Secretory Pathway (Reliability: 4)
A0A178UNR1_ARATH
467
0
52724
TrEMBL
other Location (Reliability: 4)
A0A7G2EF59_ARATH
527
0
59427
TrEMBL
other Location (Reliability: 3)
A0A178UHL7_ARATH
236
0
27195
TrEMBL
other Location (Reliability: 5)
A0A178WQ25_ARATH
1178
0
135060
TrEMBL
other Location (Reliability: 4)
A0A7G2EPQ0_ARATH
1620
0
182247
TrEMBL
Mitochondrion (Reliability: 5)
A0A654GBT7_ARATH
467
0
52766
TrEMBL
other Location (Reliability: 4)
A0A7G2E0J1_ARATH
1285
0
146779
TrEMBL
other Location (Reliability: 4)
A0A7G2DWK0_ARATH
1695
0
189345
TrEMBL
Mitochondrion (Reliability: 5)
A0A654EXH5_ARATH
1367
0
155756
TrEMBL
other Location (Reliability: 4)
F4I4I6_ARATH
129
0
14603
TrEMBL
other Location (Reliability: 2)
Q1JPN3_ARATH
467
0
52738
TrEMBL
other Location (Reliability: 4)
F4KFH9_ARATH
236
0
27195
TrEMBL
other Location (Reliability: 5)
A0A1P8ARU4_ARATH
1470
0
163539
TrEMBL
Mitochondrion (Reliability: 5)
A0A1P8ATA1_ARATH
1673
0
187333
TrEMBL
Chloroplast (Reliability: 4)
A0A5S9WSQ6_ARATH
1367
0
155772
TrEMBL
other Location (Reliability: 4)
A0A5S9X9P5_ARATH
247
0
28306
TrEMBL
other Location (Reliability: 2)
A0A654FFS2_ARATH
568
0
63134
TrEMBL
Chloroplast (Reliability: 2)
A0A654F157_ARATH
1741
0
195169
TrEMBL
Chloroplast (Reliability: 4)
A0A7G2F698_ARATH
445
0
51393
TrEMBL
Chloroplast (Reliability: 4)
A0A5S9YEL8_ARATH
467
0
52738
TrEMBL
other Location (Reliability: 4)
IDM1_ARATH
1189
0
131329
Swiss-Prot
-
ELP3_ARATH
565
0
63694
Swiss-Prot
-
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C732W
mutation abolishes the binding to histone H3
C740W
mutation abolishes the binding to histone H3
D924A
mutation in conserved residues in the histone acetyltransferase domain, abolishes the in vitro acetyltransferase activity
E451Stop
mutation results in the silencing of 35S-NPTII but not the RD29A-LUC transgene
E941Q
mutation in conserved residues in the histone acetyltransferase domain, abolishes the in vitro acetyltransferase activity
M942A
mutation in conserved residues in the histone acetyltransferase domain, diminishes the in vitro acetyltransferase activity
additional information
-
construction of hac1 mutants by T-DNA insertion, lesions in AtHAC1 cause pleiotropic developmental defects, including delayed flowering, a shortened primary root, and partially reduced fertility, phenotypes, overview, mechanism, histone modifications of FLC chromatin are not affected by mutations in HAC1, HAC1 affects flowering time by epigenetic modification of factors upstream of the flowering locus C, overview
additional information
-
analysis of T-DNA insertion mutant shows that gcn5 mutation seriously reduces acetylation of histone H3K14 and H3K27
additional information
-
using the yeast two-hybrid system it is shown that GCN5 interacts specifically with a phosphatase 2C protein (AtPP2C-6-6). AtPP2C-6-6 may function as a negative regulator of GCN5 activity in Arabidopsis thaliana
additional information
-
both male and female Ham1:Ham2 double-mutant gametophytes show abnormal development. Male double-mutant microspore mother cells and female megaspore mother cells undergo meiosis normally. Subsequently, both male and female gametophytes fail at the first post-meiotic, mitotic divisions. Fertile male pollen grains are still formed, although the lack of post-meiotic pollen mitosis I and II leads to fewer Ham1:Ham2 double-mutant pollen grains. Failure of the first post-meiotic, mitotic divisions in the female megagametogenesis, however, results in infertile Ham1:Ham2 double-mutant ovules
additional information
-
construction of T-DNA insertion gcn5 mutants, levels of accumulated miRNAs are increased in gcn5-2 mutant compared to the wild-type enzyme, targets of the increased miRNAs are e.g. DCL1 and AGO1, phenotypes, overview
additional information
-
generation of two gcn5 alleles, gcn5-1 and gcn5-5. The gcn5 mutants differ significantly from the wild-type during the earliest stages of bud initiation, gcn5-1/hag1-1 and gcn5-5/hag1-5 mutants display overproliferation of young buds and development of abnormal structures around the inflorescence meristem. Gcn5 mutants also display defects in stamen number and arrangement at later stages, phenotypes, overview
additional information
single loss-of-function ham1 mutant displays a wild-type phenotype, while no ham1ham2 double mutant seedling can be recovered, because ham1ham2 double mutation induces severe defects in the formation of male and female gametophyte, resulting in an arrest of mitotic cell cycle at early stages of gametogenesis, phenotypes, overview
additional information
single loss-of-function ham1 mutant displays a wild-type phenotype, while no ham1ham2 double mutant seedling can be recovered, because ham1ham2 double mutation induces severe defects in the formation of male and female gametophyte, resulting in an arrest of mitotic cell cycle at early stages of gametogenesis, phenotypes, overview
additional information
single loss-of-function ham2 mutant displays a wild-type phenotype, while no ham1ham2 double mutant seedling can be recovered, because ham1ham2 double mutation induces severe defects in the formation of male and female gametophyte, resulting in an arrest of mitotic cell cycle at early stages of gametogenesis, phenotypes, overview
additional information
single loss-of-function ham2 mutant displays a wild-type phenotype, while no ham1ham2 double mutant seedling can be recovered, because ham1ham2 double mutation induces severe defects in the formation of male and female gametophyte, resulting in an arrest of mitotic cell cycle at early stages of gametogenesis, phenotypes, overview
additional information
-
generation of gcn5 mutant plants which show serious defects in thermotolerance under heat-stress treatment conditions. 5% of the gcn5 seedlings recover when exposed to 38°C for 4 days compared to 55% of the wild-type plants. GCN5 mutation induces extensive changes in gene expression patterns under heat stress, overview. The expression levels of hsp101, HSP90.1, HSP70, HSP70b, HSP70T and genes encoding small heat shock proteins are decreased in the gcn5 mutant. Constitutive UVH6 expression in gcn5 mutant plants partially restores heat tolerance
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Hasan, S.; Hottiger, M.O.
Histone acetyl transferases: a role in DNA repair and DNA replication
J. Mol. Med.
80
463-474
2002
Arabidopsis thaliana, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens, Mus musculus, Tetrahymena thermophila, Homo sapiens GCN5
brenda
Bertrand, C.; Bergounioux, C.; Domenichini, S.; Delarue, M.; Zhou, D.X.
Arabidopsis histone acetyltransferase AtGCN5 regulates the floral meristem activity through the WUSCHEL/AGAMOUS pathway
J. Biol. Chem.
278
28246-28251
2003
Arabidopsis thaliana
brenda
Deng, W.; Liu, C.; Pei, Y.; Deng, X.; Niu, L.; Cao, X.
Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of flowering locus C in Arabidopsis
Plant Physiol.
143
1660-1668
2007
Arabidopsis thaliana
brenda
Servet, C.; Benhamed, M.; Latrasse, D.; Kim, W.; Delarue, M.; Zhou, D.X.
Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis
Biochim. Biophys. Acta
1779
376-382
2008
Arabidopsis thaliana
brenda
Voss, A.K.; Thomas, T.
MYST family histone acetyltransferases take center stage in stem cells and development
Bioessays
31
1050-1061
2009
Arabidopsis thaliana, Danio rerio, Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, Mus musculus, Danio rerio zMoz
brenda
Latrasse, D.; Benhamed, M.; Henry, Y.; Domenichini, S.; Kim, W.; Zhou, D.X.; Delarue, M.
The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis
BMC Plant Biol.
8
121
2008
Arabidopsis thaliana (Q9FLF7), Arabidopsis thaliana (Q9LXD7)
brenda
Kim, W.; Benhamed, M.; Servet, C.; Latrasse, D.; Zhang, W.; Delarue, M.; Zhou, D.X.
Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis
Cell Res.
19
899-909
2009
Arabidopsis thaliana
brenda
Cohen, R.; Schocken, J.; Kaldis, A.; Vlachonasios, K.E.; Hark, A.T.; McCain, E.R.
The histone acetyltransferase GCN5 affects the inflorescence meristem and stamen development in Arabidopsis
Planta
230
1207-1221
2009
Arabidopsis thaliana
brenda
Kojima, S.; Iwasaki, M.; Takahashi, H.; Imai, T.; Matsumura, Y.; Fleury, D.; Van Lijsebettens, M.; Machida, Y.; Machida, C.
Asymmetric leaves2 and Elongator, a histone acetyltransferase complex, mediate the establishment of polarity in leaves of Arabidopsis thaliana
Plant Cell Physiol.
52
1259-1273
2011
Arabidopsis thaliana (Q93ZR1), Arabidopsis thaliana
brenda
Pavangadkar, K.; Thomashow, M.F.; Triezenberg, S.J.
Histone dynamics and roles of histone acetyltransferases during cold-induced gene regulation in Arabidopsis
Plant Mol. Biol.
74
183-200
2010
Arabidopsis thaliana (Q9AR19)
brenda
Qian, W.; Miki, D.; Zhang, H.; Liu, Y.; Zhang, X.; Tang, K.; Kan, Y.; La, H.; Li, X.; Li, S.; Zhu, X.; Shi, X.; Zhang, K.; Pontes, O.; Chen, X.; Liu, R.; Gong, Z.; Zhu, J.
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis
Science
336
1445-1448
2012
Arabidopsis thaliana (F4IXE7)
brenda
Hu, Z.; Song, N.; Zheng, M.; Liu, X.; Liu, Z.; Xing, J.; Ma, J.; Guo, W.; Yao, Y.; Peng, H.; Xin, M.; Zhou, D.X.; Ni, Z.; Sun, Q.
Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis
Plant J.
84
1178-1191
2015
Arabidopsis thaliana
brenda
Aquea, F.; Timmermann, T.; Herrera-Vasquez, A.
Chemical inhibition of the histone acetyltransferase activity in Arabidopsis thaliana
Biochem. Biophys. Res. Commun.
483
664-668
2017
Arabidopsis thaliana
brenda