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Information on EC 1.7.1.7 - GMP reductase and Organism(s) Homo sapiens

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Homo sapiens
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
Synonyms
gmp reductase, gmpr2, guanosine monophosphate reductase, guanosine 5'-monophosphate reductase, tbgmpr, guanosine-5'-monophosphate reductase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
EC 1.6.6.8
-
formerly
GMPR2
Guanosine 5'-monophosphate oxidoreductase
-
-
-
-
guanosine 5'-monophosphate reductase
-
-
-
-
guanosine monophosphate reductase
guanosine monophosphate reductase 2
-
-
guanosine-5'-monophosphate reductase
-
guanylate reductase
-
-
-
-
NADPH:GMP oxidoreductase (deaminating)
-
-
-
-
reductase, guanylate
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
IMP + NH3 + NADP+ = GMP + NADPH + H+
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
-
-
-
-
redox reaction
-
-
-
-
reduction
-
-
-
-
reductive deamination
-
-
-
-
PATHWAY SOURCE
PATHWAYS
SYSTEMATIC NAME
IUBMB Comments
inosine-5'-phosphate:NADP+ oxidoreductase (aminating)
-
CAS REGISTRY NUMBER
COMMENTARY hide
9029-32-7
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
dGMP + NADPH + H+
dIMP + NH3 + NADP+
show the reaction diagram
dGMP is a poor substrate
-
-
r
dIMP + NH3 + NADP+
dGMP + NADPH + H+
show the reaction diagram
dIMP is a poor substrate
-
-
r
GMP + NADPH + H+
IMP + NH3 + NADP+
show the reaction diagram
IMP + NH3 + NADP+
GMP + NADPH + H+
show the reaction diagram
NADPH + guanosine 5'-phosphate
NADP+ + inosine 5'-phosphate + NH3
show the reaction diagram
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
GMP + NADPH + H+
IMP + NH3 + NADP+
show the reaction diagram
IMP + NH3 + NADP+
GMP + NADPH + H+
show the reaction diagram
NADPH + guanosine 5'-phosphate
NADP+ + inosine 5'-phosphate + NH3
show the reaction diagram
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADPH
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
NaCl
activating
additional information
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2'-dXMP
-
-
5,5'-dithiobis(2-nitrobenzoate)
-
0.66 mM, 33% inhibition after 30 min
6-Chloropurine ribonucleotide
-
-
6-Thio-GMP
-
-
6-thio-IMP
-
-
6-Thio-XMP
-
-
8-Aza-7-deaza-XMP
-
-
8-Aza-XMP
-
-
arabinosyl-XMP
-
-
Fe2+
-
10 mM, more than 90% inhibition
GTP
0.05 mM, 30% inhibition
mizoribine 5'-monophosphate
MZP, moderate inhibition; MZP, moderate inhibition
Mn2+
-
-
p-hydroxymercuribenzoate
-
0.66 mM, 18% inhibition after 30 min
XTP
0.05 mM, 50% inhibition
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-mercaptoethanol
-
activation
dithiothreitol
-
activation
GTP
-
nonessential activator
thioglycolic acid
-
activation
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.015
dGMP
wild type enzyme, at pH 7.8 and 25°C
0.14
dIMP
wild type enzyme, at pH 7.8 and 25°C
0.0026 - 0.38
GMP
0.023 - 1.1
IMP
0.05 - 0.42
NADP+
0.0085 - 0.12
NADPH
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.265 - 0.284
GMP
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.026
2'-dXMP
-
-
0.0003
8-Aza-XMP
-
-
0.00017 - 0.0011
XMP
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0693 - 0.1191
mizoribine 5'-monophosphate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.0052
-
-
0.35
-
-
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.1
enzyme shows 2 maxima
7.8
enzyme shows 2 maxima, strong decrease above
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6 - 9
-
pH 6: about 50% of activity at maximum, pH 9: about 70% of activity at maximum
7 - 8.2
strong decrease above
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
35 - 37
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
strong expression
Manually annotated by BRENDA team
expressed at low levels
Manually annotated by BRENDA team
expressed at low levels
Manually annotated by BRENDA team
expression of guanosine monophosphate reductase (GMPR), an enzyme involved in de novo biosynthesis of purine nucleotides, is downregulated in invasive stages of human melanoma. From 9 arbitrarily chosen human metastatic melanoma cell lines, GMPR is expressed in only one cell line
Manually annotated by BRENDA team
peripheral
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
GMPR shows high similarities in amino acid sequence and structure to inosine 5'-monophosphate dehydrogenase (IMPDH), EC 1.1.1.205, the enzyme catalyzing the NAD+-dependent oxidation of IMP to xanthosine 5'-monophosphate (XMP). But GMPR and IMPDH are generally distinguished by the cystathionine beta-synthase (CBS) domain, which is well conserved in IMPDHs but absent in GMPRs
malfunction
metabolism
the enzyme activity establishes a link between guanosine metabolism and RHOGTPase-dependent melanoma cell invasion
physiological function
GMPR downregulates the amounts of several GTP-bound (active) RHO-GTPases, and suppresses the ability of melanoma cells to form invadopodia, to degrade extracellular matrix and invade in vitro, and to grow as tumor xenografts in vivo. Enzyme GMPR partially depletes intracellular GTP pools. GMPR is a melanoma invasion suppressor, its enzymatic activity affects melanoma cell invasion and melanoma cell tumorigenicity. GMPR affects formation of invadopodia and matrix degradation. GMPR differentially regulates activity of several RHO-family GTPases, overview
additional information
kinetics and dynamics of GMP, IMP, and NADP+ when bound to enzyme GMPR: IMP and GMP are in fast exchange with GMPR. Analysis of interactions of substrate and cofactors with GMPR, epitope mapping, overview. Dynamic properties of ternary complexes in hydride transfer and deamination
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
GMPR1_HUMAN
345
0
37419
Swiss-Prot
other Location (Reliability: 4)
GMPR2_HUMAN
348
0
37874
Swiss-Prot
other Location (Reliability: 2)
H0YNJ6_HUMAN
427
0
46938
TrEMBL
Mitochondrion (Reliability: 4)
Q6PKC0_HUMAN
409
0
45008
TrEMBL
other Location (Reliability: 2)
Q7Z527_HUMAN
350
0
38517
TrEMBL
other Location (Reliability: 2)
H0YLV5_HUMAN
333
0
35852
TrEMBL
Mitochondrion (Reliability: 4)
H0YMB3_HUMAN
315
0
33922
TrEMBL
other Location (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
170000
-
gel filtration
37800
calculated from the deduced amino acid sequence
40000
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 40000, recombinant His-tagged enzyme, SDS-PAGE
homotetramer
-
tetramer
-
x-ray crystallography
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
no glycoprotein
no glycosylation site found
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging-drop vapor diffusion method
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C186A
site-directed mutagenesis, a catalytically inactive mutant, overexpression of GMPRC186A mutant at levels comparable to overexpression of wild-type GMPR does not affect invasion in of melanoma cells
D219A
the mutant shows reduced affinities for substrate and cofactor compared to the wild type enzyme
G183R
the variant causes aberrant splicing, decreased enzyme protein levels in skeletal muscle of patient with autosomal dominant progressive external ophthalmoplegia, proliferating and quiescent cells, and is associated with subtle changes in nucleotide homeostasis protein levels and evidence of disturbed mitochondrial DNA maintenance in skeletal muscle
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
67
-
15 min, 40% loss of activity
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
2-mercaptoethanol stabilizes
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-70°C, 2 months, less than 20% loss of activity
-
-70°C, 2-mercaptoethanol, 6 months, less than 15% loss of activity after several rounds of freezing and thawing
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
affinity purification on Cibacron blue
-
from recombinant COS-7 cells
Ni-NTA agarose resin column chromatography
recombinant enzyme using His-tag
-
recombinant His-tagged enzyme
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
-
expressed in Escherichia coli M15 as His-tag fusion protein
-
expression in Escherichia coli
overexpression of wild-type and mutant enzymes in SK-Mel-103 melanoma cells
transfection of HL-60 leukemia cells, expressed in COS-7 cells as His-tag fusion protein
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
expression of guanosine monophosphate reductase (GMPR), an enzyme involved in de novo biosynthesis of purine nucleotides, is downregulated in invasive stages of human melanoma
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
potential target for the treatment of leukemia
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Spector, T.; Jones, T.E.; Miller, R.L.
Reaction mechanism and specificity of human GMP reductase. Substrates, inhibitors, activators, and inactivators
J. Biol. Chem.
254
2308-2315
1979
Homo sapiens
Manually annotated by BRENDA team
Mackenzie, J.J.; Sorensen, L.B.
Guanosine 5-phosphate reductase of human erythrocytes
Biochim. Biophys. Acta
327
282-294
1973
Homo sapiens
Manually annotated by BRENDA team
Deng, Y.; Wang, Z.; Ying, K.; Gu, S.; Ji, C.; Huang, Y.; Gu, X.; Wang, Y.; Xu, Y.; Li, Y.; Xie, Y.; Mao, Y.
NADPH-dependent GMP reductase isoenzyme of human (GMPR2). Expression, purification, and kinetic properties
Int. J. Biochem. Cell Biol.
34
1035-1050
2002
Homo sapiens, Homo sapiens (Q9P2T1), no activity in Haemophilus influenzae, no activity in Methanocaldococcus jannaschii, no activity in Mycoplasma genitalium
Manually annotated by BRENDA team
Ji, C.N.; Ying, G.; Deng, Y.F.; Chen, S.; Zhang, W.H.; Shu, G.; Xie, Y.; Mao, Y.M.
Purification, crystallization and preliminary X-ray studies of GMP reductase 2 from human
Acta Crystallogr. Sect. D
59
1109-1110
2003
Homo sapiens
Manually annotated by BRENDA team
Zhang, J.; Zhang, W.; Zou, D.; Chen, G.; Wan, T.; Zhang, M.; Cao, X.
Cloning and functional characterization of GMPR2, a novel human guanosine monophosphate reductase, which promotes the monocytic differentiation of HL-60 leukemia cells
J. Cancer Res. Clin. Oncol.
129
76-83
2003
Homo sapiens (Q9P2T1), Homo sapiens
Manually annotated by BRENDA team
Li, J.; Wei, Z.; Zheng, M.; Gu, X.; Deng, Y.; Qiu, R.; Chen, F.; Ji, C.; Gong, W.; Xie, Y.; Mao, Y.
Crystal structure of human guanosine monophosphate reductase 2 (GMPR2) in complex with GMP
J. Mol. Biol.
355
980-988
2006
Homo sapiens
Manually annotated by BRENDA team
Wawrzyniak, J.A.; Bianchi-Smiraglia, A.; Bshara, W.; Mannava, S.; Ackroyd, J.; Bagati, A.; Omilian, A.R.; Im, M.; Fedtsova, N.; Miecznikowski, J.C.; Moparthy, K.C.; Zucker, S.N.; Zhu, Q.; Kozlova, N.I.; Berman, A.E.; Hoek, K.S.; Gudkov, A.V.; Shewach, D.S.; Morrison, C.D.; Nikiforov, M.A.
A purine nucleotide biosynthesis enzyme guanosine monophosphate reductase is a suppressor of melanoma invasion
Cell Rep.
5
493-507
2013
Homo sapiens (P36959), Homo sapiens
Manually annotated by BRENDA team
Rosenberg, M.M.; Redfield, A.G.; Roberts, M.F.; Hedstrom, L.
Substrate and Cofactor Dynamics on Guanosine Monophosphate Reductase Probed by High Resolution Field Cycling 31P NMR Relaxometry
J. Biol. Chem.
291
22988-22998
2016
Homo sapiens (Q9P2T1)
Manually annotated by BRENDA team
Bessho, T.; Okada, T.; Kimura, C.; Shinohara, T.; Tomiyama, A.; Imamura, A.; Kuwamura, M.; Nishimura, K.; Fujimori, K.; Shuto, S.; Ishibashi, O.; Kubata, B.K.; Inui, T.
Novel characteristics of Trypanosoma brucei guanosine 5-monophosphate reductase distinct from host animals
PLoS Negl. Trop. Dis.
10
e0004339
2016
Homo sapiens (P36959), Homo sapiens (Q9P2T1), Trypanosoma brucei brucei (Q57ZS7), Trypanosoma brucei brucei 927/4 GUTat10.1 (Q57ZS7)
Manually annotated by BRENDA team
Rosenberg, M.M.; Redfield, A.G.; Roberts, M.F.; Hedstrom, L.
Dynamic characteristics of guanosine-5'-monophosphate reductase complexes revealed by high-resolution 31P field-cycling NMR relaxometry
Biochemistry
57
3146-3154
2018
Homo sapiens (Q9P2T1)
Manually annotated by BRENDA team
Sommerville, E.W.; Dalla Rosa, I.; Rosenberg, M.M.; Bruni, F.; Thompson, K.; Rocha, M.; Blakely, E.L.; He, L.; Falkous, G.; Schaefer, A.M.; Yu-Wai-Man, P.; Chinnery, P.F.; Hedstrom, L.; Spinazzola, A.; Taylor, R.W.; Gorman, G.S.
Identification of a novel heterozygous guanosine monophosphate reductase (GMPR) variant in a patient with a late-onset disorder of mitochondrial DNA maintenance
Clin. Genet.
97
276-286
2020
Homo sapiens (P36959)
Manually annotated by BRENDA team
Bairagya, H.R.; Tasneem, A.; Rai, G.P.; Reyaz, S.
Structural and dynamical impact of water molecules at substrate- or product-binding sites in human GMPR enzyme A study by molecular dynamics simulations
J. Phys. Chem. B
125
1351-1362
2021
Homo sapiens (P36959), Homo sapiens (Q9P2T1), Homo sapiens
Manually annotated by BRENDA team