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Information on EC 1.17.4.1 - ribonucleoside-diphosphate reductase and Organism(s) Homo sapiens

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IUBMB Comments
This enzyme is responsible for the de novo conversion of ribonucleoside diphosphates into deoxyribonucleoside diphosphates, which are essential for DNA synthesis and repair. There are three types of this enzyme differing in their cofactors. Class Ia enzymes contain a diiron(III)-tyrosyl radical, class Ib enzymes contain a dimanganese-tyrosyl radical, and class II enzymes contain adenosylcobalamin. In all cases the cofactors are involved in generation of a transient thiyl (sulfanyl) radical on a cysteine residue, which attacks the substrate, forming a ribonucleotide 3'-radical, followed by water loss to form a ketyl (alpha-oxoalkyl) radical. The ketyl radical is reduced to 3'-keto-deoxynucleotide concomitant with formation of a disulfide anion radical between two cysteine residues. A proton-coupled electron-transfer from the disulfide radical to the substrate generates a 3'-deoxynucleotide radical, and the final product is formed when the hydrogen atom that was initially removed from the 3'-position of the nucleotide by the thiyl radical is returned to the same position. The disulfide bridge is reduced by the action of thioredoxin. cf. EC 1.1.98.6, ribonucleoside-triphosphate reductase (formate) and EC 1.17.4.2, ribonucleoside-triphosphate reductase (thioredoxin).
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The enzyme appears in selected viruses and cellular organisms
Synonyms
ribonucleoside diphosphate reductase, cdp reductase, class i rnr, class i ribonucleotide reductase, class ia rnr, ribonucleoside-diphosphate reductase, class ia ribonucleotide reductase, adp reductase, p53-inducible ribonucleotide reductase, class ic ribonucleotide reductase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
-
-
-
-
ADP reductase
-
-
-
-
CDP reductase
-
-
-
-
class I ribonucleotide reductase
class I RR
-
-
class Ia RNR
-
-
nucleoside diphosphate reductase
-
-
-
-
p53-inducible ribonucleotide reductase
-
-
reductase, ribonucleoside diphosphate
-
-
-
-
ribonucleoside 5'-diphosphate reductase
-
-
-
-
ribonucleoside diphosphate reductase
-
-
-
-
ribonucleoside-diphosphate reductase subunit M2 B
-
ribonucleotide diphosphate reductase
-
-
-
-
ribonucleotide reductase
UDP reductase
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
2'-deoxyribonucleoside 5'-diphosphate + thioredoxin disulfide + H2O = ribonucleoside 5'-diphosphate + thioredoxin
show the reaction diagram
proposed mechanism
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
-
-
-
-
redox reaction
-
-
-
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reduction
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
2'-deoxyribonucleoside-5'-diphosphate:thioredoxin-disulfide 2'-oxidoreductase
This enzyme is responsible for the de novo conversion of ribonucleoside diphosphates into deoxyribonucleoside diphosphates, which are essential for DNA synthesis and repair. There are three types of this enzyme differing in their cofactors. Class Ia enzymes contain a diiron(III)-tyrosyl radical, class Ib enzymes contain a dimanganese-tyrosyl radical, and class II enzymes contain adenosylcobalamin. In all cases the cofactors are involved in generation of a transient thiyl (sulfanyl) radical on a cysteine residue, which attacks the substrate, forming a ribonucleotide 3'-radical, followed by water loss to form a ketyl (alpha-oxoalkyl) radical. The ketyl radical is reduced to 3'-keto-deoxynucleotide concomitant with formation of a disulfide anion radical between two cysteine residues. A proton-coupled electron-transfer from the disulfide radical to the substrate generates a 3'-deoxynucleotide radical, and the final product is formed when the hydrogen atom that was initially removed from the 3'-position of the nucleotide by the thiyl radical is returned to the same position. The disulfide bridge is reduced by the action of thioredoxin. cf. EC 1.1.98.6, ribonucleoside-triphosphate reductase (formate) and EC 1.17.4.2, ribonucleoside-triphosphate reductase (thioredoxin).
CAS REGISTRY NUMBER
COMMENTARY hide
9047-64-7
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ADP + thioredoxin
2'-dADP + thioredoxin disulfide + H2O
show the reaction diagram
CDP + reduced thioredoxin
2'-dCDP + thioredoxin disulfide + H2O
show the reaction diagram
-
-
-
-
?
CDP + thioredoxin
2'-dCDP + thioredoxin disulfide + H2O
show the reaction diagram
GDP + thioredoxin
2'-dGDP + thioredoxin disulfide + H2O
show the reaction diagram
-
-
-
?
nucleoside 5'-diphosphate + glutaredoxin
2'-deoxynucleoside 5'-diphosphate + glutaredoxin disulfide + H2O
show the reaction diagram
-
class Ia RNRs
-
-
?
nucleoside 5'-diphosphate + thioredoxin
2'-deoxynucleoside 5'-diphosphate + thioredoxin disulfide + H2O
show the reaction diagram
-
class Ia RNRs
-
-
?
ribonucleoside 5'-diphosphate + thioredoxin
2'-deoxyribonuleoside 5'-diphosphate + thioredoxin disulfide + H2O
show the reaction diagram
ribonucleoside diphosphate + reduced thioredoxin
2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O
show the reaction diagram
UDP + thioredoxin
2'-dUDP + thioredoxin disulfide + H2O
show the reaction diagram
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
nucleoside 5'-diphosphate + glutaredoxin
2'-deoxynucleoside 5'-diphosphate + glutaredoxin disulfide + H2O
show the reaction diagram
-
class Ia RNRs
-
-
?
nucleoside 5'-diphosphate + thioredoxin
2'-deoxynucleoside 5'-diphosphate + thioredoxin disulfide + H2O
show the reaction diagram
-
class Ia RNRs
-
-
?
ribonucleoside 5'-diphosphate + thioredoxin
2'-deoxyribonuleoside 5'-diphosphate + thioredoxin disulfide + H2O
show the reaction diagram
-
the essential enzyme catalyzes the rate-limiting step in dNTP production for DNA synthesis
-
-
?
ribonucleoside diphosphate + reduced thioredoxin
2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O
show the reaction diagram
-
enzyme catalyzes the first unique step in DNA synthesis
-
?
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
diferric(III)-tyrosyl radical cofactor
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class I enzymes
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glutaredoxin
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class Ia RNRs
thioredoxin
additional information
-
cofactor specificity and binding, role in reaction, overview
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METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Fe2+
-
monomers A and B exhibit mono- and binuclear iron occupancy, the active site iron coordination environment, involving E131, H134, D100, E194, E228, and H231, is different between monomers A and B, binding structure, overview. Mobility and accessibility of the radical iron center, and radical transfer pathway, overview
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(-)-epicatechin
-
interacts with the R2 protein, leading to a loss of the tyrosyl radical EPR signal. Proliferation of cells exposed to (-)-epicatechin is downregulated, and deoxyribonucleotide levels are significantly diminished
(2E)-2-(anthracen-9-ylmethylidene)-N-hydroxyhydrazinecarboximidamide
-
i.e. ABNM-13, application leads to significant alterations of deoxyribonucleoside triphosphate pool balance and a highly significant decrease of incorporation of radiolabeled cytidine into DNA of HL-60 cells. Diminished ribonucleotide reductase activity causes replication stress which is consistent with activation of Chk1 and Chk2, resulting in downregulation/degradation of Cdc25A. Cdc25B is upregulated, leading to dephosphorylation and activation of Cdk1. The combined disregulation of Cdc25A and Cdc25B is the most likely cause for ABNM-13 induced S-phase arrest
1,10-phenanthroline
-
-
2,3,4-Trihydroxybenzamide
-
-
2,3,4-trihydroxybenzohydroxamic acid
-
0.0035 mM, 50% inhibition
2,3-dihydroxybenzohydroxamic acid
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0.008 mM, 50% inhibition
2,4-dichlorobenzohydroxamic acid
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0.45 mM, 50% inhibition
2,4-dihydroxybenzohydroxamic acid
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0.3 mM, 50% inhibition
2,5-dihydroxybenzohydroxamic acid
-
0.2 mM, 50% inhibition
2,6-dihydroxybenzohydroxamic acid
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0.1 mM, 50% inhibition
2-(diphenylmethylidene)-N,N-dimethylhydrazinecarbothioamide
-
metal chelator, significantly decreases ribonucleotide reductase activity, whereas the NADPH/NADP+ total ratio is not reduced
2-acetylpyridine N,N-dimethylthiosemicarbazonato-N,N,S-dichlorogallium(III)
-
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2-acetylpyridine N-pyrrolidinylthiosemicarbazonato-N,N,S-dichlorogallium(III)
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2-aminobenzohydroxamic acid
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0.12 mM, 50% inhibition
2-furan-3-ylbenzaldehyde N-(4-hydroxyphenyl)thiosemicarbazone
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2-furan-3-ylbenzaldehyde N-phenylthiosemicarbazone
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2-hydroxy-3-methylbenzohydroxamic acid
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0.15 mM, 50% inhibition
2-hydroxy-4-aminobenzohydroxamic acid
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0.2 mM, 50% inhibition
2-hydroxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
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2-hydroxybenzaldehyde N-phenylthiosemicarbazone
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2-hydroxybenzohydroxamic acid
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0.15 mM, 50% inhibition
2-thiophen-2-ylbenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
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2-thiophen-2-ylbenzaldehyde N-phenylthiosemicarbazone
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2-[di(pyridin-2-yl)methylidene]-N,N-dimethylhydrazinecarbothioamide
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metal chelator, significantly decreases ribonucleotide reductase activity, whereas the NADPH/NADP+ total ratio is not reduced
3,4,5-Trihydroxybenzamide
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3,4,5-Trihydroxybenzohydroxamic acid
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0.01 mM, 50% inhibition
3,4,5-Trihydroxybenzoic acid
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3,4,5-trimethoxybenzohydroxamic acid
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0.1 mM, 50% inhibition
3,4-diaminobenzohydroxamic acid
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0.04 mM, 50% inhibition
3,4-dichlorobenzohydroxamic acid
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0.3 mM, 50% inhibition
3,4-Dihydroxybenzamide
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-
3,4-dihydroxybenzohydroxamic acid
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0.03 mM, 50% inhibition
3,4-dimethoxybenzohydroxamic acid
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0.3 mM, 50% inhibition
3,4-dimethylbenzohydroxamic acid
-
0.3 mM, 50% inhibition
3,5-diamino-1H-1,2,4-triazole
3,5-diaminopyridine-2-carboxaldehyde thiosemicarbazone
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3,5-dihydroxybenzohydroxamic acid
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0.4 mM, 50% inhibition
3-amino-4-methylpyridine-2-carboxaldehyde thiosemicarbazone
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-
3-aminobenzohydroxamic acid
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0.35 mM, 50% inhibition
3-aminopyridine-2-carboxaldehyde thiosemicarbazone
3-aminopyridine-2-carboxaldehyde-thiosemicarbazone
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i.e. 3-AP, phase I study in combination with high dose cytarabine in patients with advanced myeloid leukemia, resulting in enhanced cytarabine cytotoxicity with possible methemoglobinemia, overview
3-hydroxybenzohydroxamic acid
-
0.35 mM, 50% inhibition
3-methyl aminopyridine-2-carboxaldehyde thiosemicarbazone
-
-
4-aminobenzohydroxamic acid
-
0.15 mM, 50% inhibition
4-dimethylaminobenzohydroxamic acid
-
0.5 mM, 50% inhibition
4-hydroxy-3-methoxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
-
-
4-hydroxy-3-methoxybenzaldehyde N-phenylthiosemicarbazone
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-
4-hydroxybenzaldehyde N-(2-chlorophenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(2-hydroxyphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(2-methoxyphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(2-methylphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(2-nitrophenyl)thiosemicarbazone
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-
4-hydroxybenzaldehyde N-(3-chlorophenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(3-hydroxyphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(3-methylphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(4-hydroxyphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(4-methylphenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-(4-nitrophenyl)thiosemicarbazone
-
-
4-hydroxybenzaldehyde N-phenylthiosemicarbazone
-
-
4-hydroxybenzohydroxamic acid
-
0.30 mM, 50% inhibition
4-methoxybenzohydroxamic acid
-
0.5 mM, 50% inhibition
4-methylaminobenzohydroxamic acid
-
0.33 mM, 50% inhibition
4-nitrobenzohydroxamic acid
-
0.5 mM, 50% inhibition
5'-O-valproyl-3'-C-methyladenosine
inhibits ribonucleotide reductase activity by competing with ATP as an allosteric effector and concomitantlyreduces the intracellular deoxyribonucleoside triphosphate pools. In contrast to previously used ribonucleotide reductase nucleoside analogs does not require intracellular kinases for its activity and therefore holds promise against drug resistant tumors with downregulated nucleoside kinases
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5-(1-Aziridinyl)-2,4-dinitrobenzamide
-
-
5-amino-4-morpholinomethylpyridine-2-carboxaldehyde thiosemicarbazone
-
-
5-aminopyridine-2-carboxaldehyde thiosemicarbazone
-
-
5-hydroxy-4-methyl-1-formylisoquinoline thiosemicarbazone
-
-
5-methyl-4-amino-1-formylisoquinoline thiosemicarbazone
-
-
6-chloro-9H-(3-C-methyl-2,3-di-O-acetyl-5-O-benzoyl-beta-D-ribofuranosyl)purine
-
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Acetohydroxamic acid
-
1 mM, 50% inhibition
benzohydroxamic acid
-
0.4 mM, 50% inhibition
caracemide
-
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chlorambucil
-
-
cisplatin
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-
clofarabine
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an adenosine analogue is used in the treatment of refractory leukemias. Its mode of cytotoxicity is associated in part with the triphosphate functioning as an allosteric reversible inhibitor of hRNR, rapid inactivation
clofarabine diphosphate
-
ClFDP, a C-site slow-binding, reversible inhibitor, mechanism of inhibition via altering the quaternary structure of the large subunit of RNR, overview. Binds also mutant D57N-alpha subunit. CDP protects against inhibition
clofarabine triphosphate
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ClFTP, an A-site rapidly binding reversible inhibitor, mechanism of inhibition via altering the quaternary structure of the large subunit of RNR, overview. Neither CDP (C site) nor dGTP (A site) had any effect on inhibition by ClFTP
Co2+
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RNR activity chelates with copper leading to inactivation
dATP
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inhibition of ADP reduction; inhibition of CDP reduction; inhibition of GDP reduction
deferoxamine mesylate
desferrioxamine
-
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dGTP
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dTTP
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-
gemcitabine
-
-
Hydroxyurea
IRBIT
IRBIT is a conserved metazoan protein implicated in diverse functions. IRBIT consists of a putative enzymatic domain that has similarity to S-adenosylhomocysteine hydrolase and an essential N-terminal domain of 104 amino acids. It forms a dATP–dependent complex with ribonucleotide reductase, which stabilizes dATP in the activity site of ribonucleotide reductase and thus inhibits the enzyme. Formation of the ribonucleotide reductase-IRBIT complex is regulated through phosphorylation of IRBIT, and ablation of IRBIT expression in HeLa cells causes imbalanced dNTP pools and altered cell cycle progression. Under normal physiological conditions, where ATP levels are high, such inhibition can only be achieved when binding of IRBIT is strengthened by phosphorylation
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Isoquinoline-1-carboxaldehyde thiosemicarbazone
-
-
Methyl 3,4,5-trihydroxybenzoate
-
-
N-Methyl 3,4,5-trihydroxybenzamide
-
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N6-(2-furanylmethyl)-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
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N6-(2-thienylmethyl)-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
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N6-(3-pyrazolyl)-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
-
N6-cyclobutyl-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
-
N6-cycloheptyl-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
-
N6-endo-norbonyl-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
-
N6-phenyl-9H-(3-C-methyl-beta-D-ribofuranosyl)adenine
-
-
nicotinohydroxamic acid
-
0.8 mM, 50% inhibition
phenylacetohydroxamic acid
-
1 mM, 50% inhibition
picolinohydroxamic acid
-
0.5 mM, 50% inhibition
Pyridine-2-carboxaldehyde thiosemicarbazone
-
-
triapine
[bis(2-acetylpyridine N,N-dimethylthiosemicarbazonato)-N,N,S-gallium(III)] hexafluorophosphate
-
-
[bis(2-acetylpyridine N,N-dimethylthiosemicarbazonato)-N,N,S-iron(III)] hexafluorophosphate
-
-
[bis(2-acetylpyridine N,N-dimethylthiosemicarbazonato)-N,N,S-iron(III)] tetrachloroferrate(III)
-
-
[bis(2-acetylpyridine N-pyrrolidinylthiosemicarbazonato)-N,N,S-gallium(III)] hexafluorophosphate
-
-
[bis(2-acetylpyridine N-pyrrolidinylthiosemicarbazonato)-N,N,S-iron(III)] hexafluorophosphate
-
-
[bis(2-acetylpyridine N-pyrrolidinylthiosemicarbazonato)-N,N,S-iron(III)] tetrachloroferrate(III)
-
-
[bis(acetylpyrazine N,N-dimethylthiosemicarbazonato)-N,N,S-gallium(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N,N-dimethylthiosemicarbazonato)-N,N,S-iron(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N,N-dimethylthiosemicarbazonato)-N,N,S-iron(III)] tetrachloroferrate(III)
-
-
[bis(acetylpyrazine N-piperidinylthiosemicarbazonato)-N,N,S-gallium(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N-piperidinylthiosemicarbazonato)-N,N,S-iron(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N-piperidinylthiosemicarbazonato)-N,N,S-iron(III)] tetrachloroferrate(III)
-
-
[bis(acetylpyrazine N-pyrrolidinylthiosemicarbazonato)-N,N,S-gallium(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N-pyrrolidinylthiosemicarbazonato)-N,N,S-iron(III)] hexafluorophosphate
-
-
[bis(acetylpyrazine N-pyrrolidinylthiosemicarbazonato)-N,N,S-iron(III)] tetrachloroferrate(III)
-
-
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
dCTP
-
stimulation of UDP reduction
P53
-
activates, required
additional information
-
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.4
5'-O-valproyl-3'-C-methyladenosine
pH and temperature not specified in the publication
-
0.00004
clofarabine
-
pH not specified in the publication, temperature not specified in the publication
additional information
additional information
-
inhibition kinetics of clofarabine di- and triphosphates, overview
-
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.011
(2E)-2-(anthracen-9-ylmethylidene)-N-hydroxyhydrazinecarboximidamide
Homo sapiens
-
pH not specified in the publication, temperature not specified in the publication
0.5
2-furan-3-ylbenzaldehyde N-(4-hydroxyphenyl)thiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
2-furan-3-ylbenzaldehyde N-phenylthiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
2-hydroxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
2-hydroxybenzaldehyde N-phenylthiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
2-thiophen-2-ylbenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
2-thiophen-2-ylbenzaldehyde N-phenylthiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
4-hydroxy-3-methoxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.5
4-hydroxy-3-methoxybenzaldehyde N-phenylthiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.047
4-hydroxybenzaldehyde N-(2-chlorophenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.029
4-hydroxybenzaldehyde N-(2-hydroxyphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.042
4-hydroxybenzaldehyde N-(2-methoxyphenyl)thiosemicarbazone
Homo sapiens
-
above, pH 7.2, 37°C
0.037
4-hydroxybenzaldehyde N-(2-methylphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.039
4-hydroxybenzaldehyde N-(2-nitrophenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.029
4-hydroxybenzaldehyde N-(3-chlorophenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.029
4-hydroxybenzaldehyde N-(3-hydroxyphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.03
4-hydroxybenzaldehyde N-(3-methylphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.287
4-hydroxybenzaldehyde N-(4-chlorophenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.043
4-hydroxybenzaldehyde N-(4-hydroxyphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.014
4-hydroxybenzaldehyde N-(4-methylphenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.045
4-hydroxybenzaldehyde N-(4-nitrophenyl)thiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
0.242
4-hydroxybenzaldehyde N-phenylthiosemicarbazone
Homo sapiens
-
pH 7.2, 37°C
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.5
-
ligand binding assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
-
a colon adenocarcinoma cell line
Manually annotated by BRENDA team
-
small cell lung carcinoma
Manually annotated by BRENDA team
-
a myelogenous leukemia cell line
Manually annotated by BRENDA team
-
nasopharyngeal carcinoma cells, a gemcitabine-resistant cell line
Manually annotated by BRENDA team
-
Molt 4F cells
Manually annotated by BRENDA team
-
a breast carcinoma cell line
Manually annotated by BRENDA team
-
neuroepithelioma cell
Manually annotated by BRENDA team
additional information
-
RNR expression in small cell lung cancer cell lines, overview
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
enzyme may be specifically associated with mitochondria
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
metabolism
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
RIR2B_HUMAN
351
1
40737
Swiss-Prot
other Location (Reliability: 1)
RIR1_HUMAN
792
0
90070
Swiss-Prot
other Location (Reliability: 3)
RIR2_HUMAN
389
0
44878
Swiss-Prot
other Location (Reliability: 2)
Q9UKM0_HUMAN
33
0
3616
TrEMBL
other Location (Reliability: 2)
B4E0I8_HUMAN
695
0
79230
TrEMBL
other Location (Reliability: 1)
B3KS26_HUMAN
297
1
34556
TrEMBL
other Location (Reliability: 2)
B4DNN4_HUMAN
762
0
86452
TrEMBL
other Location (Reliability: 2)
Q53GZ5_HUMAN
792
0
89972
TrEMBL
other Location (Reliability: 3)
H0YCY7_HUMAN
130
1
14123
TrEMBL
other Location (Reliability: 3)
B4DS95_HUMAN
683
0
77626
TrEMBL
other Location (Reliability: 3)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
100000
-
alpha,beta, 1 * 100000 + 1 * 100000, Molt F4 lymphoblast cells
160000
-
2 * 160000, subunit R1, + 2 * 78000, subunit R2, the catalytic active enzyme forms a dimer of homodimers
78000
-
2 * 160000, subunit R1, + 2 * 78000, subunit R2, the catalytic active enzyme forms a dimer of homodimers
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
-
alpha,beta, 1 * 100000 + 1 * 100000, Molt F4 lymphoblast cells
multimer
-
alphanbetan multi-subunit protein complex consisting of subunit types RR1 and RR2, the alpha or RR1 subunit contains the catalytic C site and two allosteric sites, while the beta or RR2 subunit houses a stable tyrosyl free radical that is transferred some 35 A to the catalytic site to initiate radical-based chemistry on the substrate
oligomer
-
RNRs are composed of alpha- and beta-subunits that form active (alpha)n(beta)m, with n or m being 2 or 6, complexes. Subunit alpha binds NDP substrates, i.e. CDP, UDP, ADP, and GDP, C site, as well as ATP and dNTPs, i.e. dATP, dGTP, TTP, allosteric effectors that control enzyme activity (A site) and substrate specificity, S site
tetramer
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
purified recombinant His6-tagged hp53R2, sitting drop vapor diffusion method, at 25°C, 0.002 ml of 4.5 mg/ml protein in 20 mM Tris, pH 7.5, are mixed with 150 mM NaCl and 0.002 ml of precipitant solution containing 0.1 M sodium citrate, pH 6.45, 1.3 M Li2SO4, and 0.5 M (NH4)2SO4, reservoir volume is 0.250 ml, 7-14 days, addition of ferrous ammonium sulfate of 5 mM 1 h prior to harvesting, X-ray diffraction structure determination and analysis at 2.6 A resolution
-
subunit RR1 in complex with TTP, dATP, TTP/GDP, TTP/ATP, and TTP/dATP, 1. TTP bound at the S-site, 2. dATP bound at the S-site, 3. TTP bound at the S-site and GDP at the C-site, 4. TTP bound at the S-site and ATP at the A-site, and 5. TTP bound at the S-site and dATP at the A-site, X-ray diffraction structure determination and analysis at resolutions of 2.4 A, 2.3 A, 3.2 A, 3.1 A, and 3.1 A, respectively
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D16R
-
site-directed mutagenesis, the mutant retains 55% of wild-type activity for CDP reduction, and 67% for ADP reduction, it is not inhibited and does not form hexamers at physiologically relevant dATP concentrations
D287A
H2E
-
site-directed mutagenesis, the mutant retains 56% of wild-type activity for CDP reduction, and 56% for ADP reduction
K95E
mutation in small subunit M2, results in dimer disassembly and enzyme activity inhibition. Mutant is capable of generating the diiron and tyrosyl radical cofactor, but the disassembly of the M2 dimer reduces its interaction with the large subunit M1. The transfection of the wild-type M2 but not the K95E mutant rescues theG1/S phase cell cycle arrest and cell growth inhibition caused by the siRNA knockdown of M2
K95E/E98K
charge-exchanging double mutation, recovers the dimerization and activity lost in mutant K95E
additional information
-
expression of subunit R2 siRNA 1284, targeting the AA(N19) sequence motif, inhibits R2 expression and active enzyme complex formation in different cell lines, it also inhibits cell growth and proloferation in vitro by blocking in the S-phase of the cell cycle, overview
OXIDATION STABILITY
ORGANISM
UNIPROT
LITERATURE
in hypoxic conditions the small subunit of the ribonucleotide reductase enzyme is switched from RRM2 to RRM2B in order to facilitate nucleotide production and ongoing replication. Specific residues within RRM2B are identified that are responsible for maintaining activity in hypoxia. RRM2B retains activity in hypoxic conditions and is the favored ribonucleotide reductase subunit in hypoxia. Loss of RRM2B has detrimental consequences for cell fate, specifically in hypoxia
745759
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant His-tagged alpha and beta subunits by affinity chromatography
-
recombinant His6-tagged enzyme from Escherichia coli strain BL21(DE3) by nickel affinity chromatography and gel filtration
-
recombinant His6-tagged subunits hRRM1 and hRRM2 from Escherichia coli strain BL21(DE3)
-
recombinant His6-tagged subunits M2, p53R2, and M1 from Escherichia coli strain BL21(DE3) by nickel affinity chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Escherichia coli BL-21 (DE3)
expression of His-tagged alpha and beta subunits and of His-tagged mutant alpha-subunit
-
expression of His6-tagged enzyme in Escherichia coli strain BL21(DE3)
-
expression of His6-tagged subunits hRRM1 and hRRM2 in Escherichia coli strain BL21(DE3)
-
expression of His6-tagged subunits M2, p53R2, and M1 in Escherichia coli strain BL21(DE3)
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
subunit RRM2B is induced in response to hypoxia
the thiazolyl hydrazone VG19 lowers the protein levels of ribonucleotide reductase subunits R1 and R2 and significantly diminishes the incorporation of radio-labeled 14C cytidine, being equivalent to an inhibition of DNA synthesis
the thiazolyl hydrazone VG19 lowers the protein levels of ribonucleotide reductase subunits R1 and R2 and significantly diminishes the incorporation of radio-labeled 14Ccytidine, being equivalent to an inhibition of DNA synthesis
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
drug development
medicine
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Elford, H.L.; Van't Riet, B.; Wampler, G.L.; Lin, A.L.; Elford, R.M.
Regulation of ribonucleotide reductase in mammalian cells by chemotherapeutic agents
Adv. Enzyme Regul.
19
151-168
1981
Homo sapiens
Manually annotated by BRENDA team
Lammers, M.; Follmann, H.
The ribonucleotide reductases - a unique group of metalloenzymes essential for cell proliferation
Struct. Bonding
54
27-91
1983
Tequatrovirus T4, Tequintavirus T5, Enterobacteria phage T6, Bos taurus, Saccharomyces cerevisiae, Oryctolagus cuniculus, Escherichia coli, Homo sapiens, Mesocricetus auratus, Mus musculus, Rattus norvegicus, Tetradesmus obliquus
-
Manually annotated by BRENDA team
Holmgren, A.
Regulation of ribonucleotide reductase
Curr. Top. Cell. Regul.
19
47-76
1981
Escherichia phage T2, Tequatrovirus T4, Tequintavirus T5, Enterobacteria phage T6, Bos taurus, Oryctolagus cuniculus, Escherichia coli, Homo sapiens, Rattus norvegicus
Manually annotated by BRENDA team
Young, P.; Leeds, J.M.; Slabaugh, M.B.; Mathews, C.K.
Ribonucleotide reductase: evidence for specific association with HeLa cell mitochondria
Biochem. Biophys. Res. Commun.
203
46-52
1994
Homo sapiens
Manually annotated by BRENDA team
Schroeder, P.; Voevodskaya, N.; Klotz, L.O.; Brenneisen, P.; Graslund, A.; Sies, H.
Loss of the tyrosyl radical in mouse ribonucleotide reductase by (-)-epicatechin
Biochem. Biophys. Res. Commun.
326
614-617
2005
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Shao, J.; Zhou, B.; Zhu, L.; Bilio, A.J.; Su, L.; Yuan, Y.C.; Ren, S.; Lien, E.J.; Shih, J.; Yen, Y.
Determination of the potency and subunit-selectivity of ribonucleotide reductase inhibitors with a recombinant-holoenzyme-based in vitro assay
Biochem. Pharmacol.
69
627-634
2005
Homo sapiens
Manually annotated by BRENDA team
Qiu, W.; Zhou, B.; Darwish, D.; Shao, J.; Yen, Y.
Characterization of enzymatic properties of human ribonucleotide reductase holoenzyme reconstituted in vitro from hRRM1, hRRM2, and p53R2 subunits
Biochem. Biophys. Res. Commun.
340
428-434
2006
Homo sapiens (Q7LG56)
Manually annotated by BRENDA team
Gautam, A.; Bepler, G.
Suppression of lung tumor formation by the regulatory subunit of ribonucleotide reductase
Cancer Res.
66
6497-6502
2006
Mus musculus, Homo sapiens (P23921)
Manually annotated by BRENDA team
Avolio, T.M.; Lee, Y.; Feng, N.; Xiong, K.; Jin, H.; Wang, M.; Vassilakos, A.; Wright, J.; Young, A.
RNA interference targeting the R2 subunit of ribonucleotide reductase inhibits growth of tumor cells in vitro and in vivo
Anticancer Drugs
18
377-388
2007
Homo sapiens
Manually annotated by BRENDA team
Sigmond, J.; Kamphuis, J.A.; Laan, A.C.; Hoebe, E.K.; Bergman, A.M.; Peters, G.J.
The synergistic interaction of gemcitabine and cytosine arabinoside with the ribonucleotide reductase inhibitor triapine is schedule dependent
Biochem. Pharmacol.
73
1548-1557
2007
Homo sapiens
Manually annotated by BRENDA team
Odenike, O.M.; Larson, R.A.; Gajria, D.; Dolan, M.E.; Delaney, S.M.; Karrison, T.G.; Ratain, M.J.; Stock, W.
Phase I study of the ribonucleotide reductase inhibitor 3-aminopyridine-2-carboxaldehyde-thiosemicarbazone (3-AP) in combination with high dose cytarabine in patients with advanced myeloid leukemia
Invest. New Drugs
26
233-239
2008
Homo sapiens
Manually annotated by BRENDA team
Kowol, C.R.; Berger, R.; Eichinger, R.; Roller, A.; Jakupec, M.A.; Schmidt, P.P.; Arion, V.B.; Keppler, B.K.
Gallium(III) and iron(III) complexes of alpha-N-heterocyclic thiosemicarbazones: synthesis, characterization, cytotoxicity, and interaction with ribonucleotide reductase
J. Med. Chem.
50
1254-1265
2007
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Cappellacci, L.; Franchetti, P.; Vita, P.; Petrelli, R.; Lavecchia, A.; Jayaram, H.N.; Saiko, P.; Graser, G.; Szekeres, T.; Grifantini, M.
Ribose-modified purine nucleosides as ribonucleotide reductase inhibitors. Synthesis, antitumor activity, and molecular modeling of N6-substituted 3-C-methyladenosine derivatives
J. Med. Chem.
51
4260-4269
2008
Homo sapiens
Manually annotated by BRENDA team
Karp, J.E.; Giles, F.J.; Gojo, I.; Morris, L.; Greer, J.; Johnson, B.; Thein, M.; Sznol, M.; Low, J.
A phase I study of the novel ribonucleotide reductase inhibitor 3-aminopyridine-2-carboxaldehyde thiosemicarbazone (3-AP, Triapine) in combination with the nucleoside analog fludarabine for patients with refractory acute leukemias and aggressive myeloprol
Leuk. Res.
32
71-77
2008
Homo sapiens
Manually annotated by BRENDA team
Zhu, L.; Zhou, B.; Chen, X.; Jiang, H.; Shao, J.; Yen, Y.
Inhibitory mechanisms of heterocyclic carboxaldehyde thiosemicabazones for two forms of human ribonucleotide reductase
Biochem. Pharmacol.
78
1178-1185
2009
Homo sapiens
Manually annotated by BRENDA team
Smith, P.; Zhou, B.; Ho, N.; Yuan, Y.C.; Su, L.; Tsai, S.C.; Yen, Y.
2.6 a X-ray crystal structure of human p53R2, a p53-inducible ribonucleotide reductase
Biochemistry
48
11134-11141
2009
Homo sapiens
Manually annotated by BRENDA team
Krishnan, K.; Prathiba, K.; Jayaprakash, V.; Basu, A.; Mishra, N.; Zhou, B.; Hu, S.; Yen, Y.
Synthesis and ribonucleotide reductase inhibitory activity of thiosemicarbazones
Bioorg. Med. Chem. Lett.
18
6248-6250
2008
Homo sapiens
Manually annotated by BRENDA team
Holmgren, A.; Sengupta, R.
The use of thiols by ribonucleotide reductase
Free Radic. Biol. Med.
49
1617-1628
2010
Saccharomyces cerevisiae, Escherichia coli, Homo sapiens, Lactobacillus leichmannii, Mus musculus
Manually annotated by BRENDA team
Fairman, J.W.; Wijerathna, S.R.; Ahmad, M.F.; Xu, H.; Nakano, R.; Jha, S.; Prendergast, J.; Welin, R.M.; Flodin, S.; Roos, A.; Nordlund, P.; Li, Z.; Walz, T.; Dealwis, C.G.
Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization
Nat. Struct. Mol. Biol.
18
316-322
2011
Homo sapiens
Manually annotated by BRENDA team
Aye, Y.; Stubbe, J.
Clofarabine 5-di and -triphosphates inhibit human ribonucleotide reductase by altering the quaternary structure of its large subunit
Proc. Natl. Acad. Sci. USA
108
9815-9820
2011
Homo sapiens
Manually annotated by BRENDA team
Saiko, P.; Graser, G.; Giessrigl, B.; Lackner, A.; Grusch, M.; Krupitza, G.; Basu, A.; Sinha, B.; Jayaprakash, V.; Jaeger, W.; Fritzer-Szekeres, M.; Szekeres, T.
A novel N-hydroxy-N-aminoguanidine derivative inhibits ribonucleotide reductase activity: Effects in human HL-60 promyelocytic leukemia cells and synergism with arabinofuranosylcytosine (Ara-C)
Biochem. Pharmacol.
81
50-59
2011
Homo sapiens
Manually annotated by BRENDA team
Chen, X.; Xu, Z.; Zhang, L.; Liu, H.; Liu, X.; Lou, M.; Zhu, L.; Huang, B.; Yang, C.G.; Zhu, W.; Shao, J.
The conserved Lys-95 charged residue cluster is critical for the homodimerization and enzyme activity of human ribonucleotide reductase small subunit m2
J. Biol. Chem.
289
909-920
2014
Homo sapiens (P31350)
Manually annotated by BRENDA team
Yu, Y.; Suryo Rahmanto, Y.; Hawkins, C.L.; Richardson, D.R.
The potent and novel thiosemicarbazone chelators di-2-pyridylketone-4,4-dimethyl-3-thiosemicarbazone and 2-benzoylpyridine-4,4-dimethyl-3-thiosemicarbazone affect crucial thiol systems required for ribonucleotide reductase activity
Mol. Pharmacol.
79
921-931
2011
Homo sapiens
Manually annotated by BRENDA team
Pontarin, G.; Ferraro, P.; Bee, L.; Reichard, P.; Bianchi, V.
Mammalian ribonucleotide reductase subunit p53R2 is required for mitochondrial DNA replication and DNA repair in quiescent cells
Proc. Natl. Acad. Sci. USA
109
13302-13307
2012
Homo sapiens (Q7LG56)
Manually annotated by BRENDA team
Knappenberger, A.J.; Ahmad, M.F.; Viswanathan, R.; Dealwis, C.G.; Harris, M.E.
Nucleoside analogue triphosphates allosterically regulate human ribonucleotide reductase and identify chemical determinants that drive substrate specificity
Biochemistry
55
5884-5896
2016
Saccharomyces cerevisiae, Homo sapiens (P23921), Homo sapiens (P23921 and P31350), Homo sapiens
Manually annotated by BRENDA team
Petrelli, R.; Meli, M.; Vita, P.; Torquati, I.; Ferro, A.; Vodnala, M.; DAlessandro, N.; Tolomeo, M.; Del Bello, F.; Kusumanchi, P.; Franchetti, P.; Grifantini, M.; Jayaram, H.N.; Hofer, A.; Cappellacci, L.
From the covalent linkage of drugs to novel inhibitors of ribonucleotide reductase synthesis and biological evaluation of valproic esters of 3-C-methyladenosine
Bioorg. Med. Chem. Lett.
24
5304-5309
2014
Homo sapiens (P23921)
Manually annotated by BRENDA team
Graser-Loescher, G.; Schoenhuber, A.; Ciglenec, C.; Eberl, S.; Krupitza, G.; Mader, R.M.; Jadav, S.S.; Jayaprakash, V.; Fritzer-Szekeres, M.; Szekeres, T.; Saiko, P.
Thiosemicarbazone derivatives, thiazolyl hydrazones, effectively inhibit leukemic tumor cell growth Down-regulation of ribonucleotide reductase activity and synergism with arabinofuranosylcytosine
Food Chem. Toxicol.
108
53-62
2017
Homo sapiens (P23921)
Manually annotated by BRENDA team
Lee, B.; Ha, S.Y.; Song, D.H.; Lee, H.W.; Cho, S.Y.; Park, C.K.
High expression of ribonucleotide reductase subunit M2 correlates with poor prognosis of hepatocellular carcinoma
Gut and liver
8
662-668
2014
Homo sapiens (P31350)
Manually annotated by BRENDA team
Foskolou, I.P.; Jorgensen, C.; Leszczynska, K.B.; Olcina, M.M.; Tarhonskaya, H.; Haisma, B.; DAngiolella, V.; Myers, W.K.; Domene, C.; Flashman, E.; Hammond, E.M.
Ribonucleotide reductase requires subunit switching in hypoxia to maintain DNA replication
Mol. Cell
66
206-220.e9
2017
Homo sapiens (Q7LG56)
Manually annotated by BRENDA team
Arnaoutov, A.; Dasso, M.
Enzyme regulation. IRBIT is a novel regulator of ribonucleotide reductase in higher eukaryotes
Science
345
1512-1515
2014
Homo sapiens (P23921)
Manually annotated by BRENDA team