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Information on EC 1.1.1.44 - phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) and Organism(s) Arabidopsis thaliana

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IUBMB Comments
The enzyme participates in the oxidative branch of the pentose phosphate pathway, whose main purpose is to produce NADPH and pentose for biosynthetic reactions. Highly specific for NADP+. cf. EC 1.1.1.343, phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating).
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This record set is specific for:
Arabidopsis thaliana
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Word Map
The taxonomic range for the selected organisms is: Arabidopsis thaliana
The enzyme appears in selected viruses and cellular organisms
Synonyms
6pgd, 6-pgd, 6-p-gluconate dehydrogenase, os6pgdh1, 6-phospho-d-gluconate dehydrogenase, 6-phosphogluconate dehydrogenase (decarboxylating), llpdh, tm0438, 6-phosphonogluconate dehydrogenase, 6-phosphogluconate dehydrogenase 1, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6-phospho-D-gluconate dehydrogenase
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6-phosphogluconate dehydrogenase
6-phosphogluconate dehydrogenase (decarboxylating)
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6-phosphogluconic carboxylase
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6-phosphogluconic dehydrogenase
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GNTZII
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peroxisomal 6-phosphogluconate dehydrogenase
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PGD1
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isoform
PGD2
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isoform
PGD3
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isoform
phosphogluconic acid dehydrogenase
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
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redox reaction
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reduction
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SYSTEMATIC NAME
IUBMB Comments
6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)
The enzyme participates in the oxidative branch of the pentose phosphate pathway, whose main purpose is to produce NADPH and pentose for biosynthetic reactions. Highly specific for NADP+. cf. EC 1.1.1.343, phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating).
CAS REGISTRY NUMBER
COMMENTARY hide
9073-95-4
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
6-phospho-D-gluconate + NADP+
D-ribulose 5-phosphate + CO2 + NADPH + H+
show the reaction diagram
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?
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
6-phospho-D-gluconate + NADP+
D-ribulose 5-phosphate + CO2 + NADPH + H+
show the reaction diagram
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?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADP+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
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the activityand transcript level of 6PGDH decreases to 67% of its initial activity after 7 days of phosphate starvation
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pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.34
calculated from sequence
5.62
calculated from sequence
7
calculated from amino acid sequence
7.02
calculated from sequence
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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isoform PGD1 and PGD3
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
the peroxisomal isoform is mainly involved in xenobiotic response, growth, and developmental processes
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
6PGD1_ARATH
487
0
53378
Swiss-Prot
Secretory Pathway (Reliability: 3)
6PGD2_ARATH
486
0
53577
Swiss-Prot
Secretory Pathway (Reliability: 4)
6PGD3_ARATH
487
0
53318
Swiss-Prot
Secretory Pathway (Reliability: 3)
A0A654G6Z8_ARATH
487
0
53332
TrEMBL
Secretory Pathway (Reliability: 3)
A0A178UQL8_ARATH
487
0
53318
TrEMBL
Secretory Pathway (Reliability: 3)
A0A178WJV9_ARATH
487
0
53369
TrEMBL
Secretory Pathway (Reliability: 3)
A0A178VK18_ARATH
486
0
53577
TrEMBL
Secretory Pathway (Reliability: 4)
A0A5S9WSA5_ARATH
487
0
53392
TrEMBL
Secretory Pathway (Reliability: 3)
A0A5S9Y9Z1_ARATH
487
0
53300
TrEMBL
Secretory Pathway (Reliability: 3)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
53300
calculated from sequence
53600
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 53577, calculated from amino acid sequence
homodimer or heterodimer
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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Yin, Y.; Ashihara, H.
Expression of glucose-6-phosphate dehydrogenase and 6-phosphogluconate dehydrogenase isoform genes in suspension-cultured Arabidopsis thaliana cells
Z. Naturforsch. C
63
713-720
2008
Arabidopsis thaliana
Manually annotated by BRENDA team
Lutterbey, M.C.; von Schaewen, A.
Analysis of homo- and hetero-dimerization among the three 6-phosphogluconate dehydrogenase isoforms of Arabidopsis
Plant Signal. Behav.
11
e1207034
2016
Arabidopsis thaliana
Manually annotated by BRENDA team
Fernandez-Fernandez, A.D.; Corpas, F.J.
In silico analysis of Arabidopsis thaliana peroxisomal 6-phosphogluconate dehydrogenase
Scientifica
2016
3482760
2016
Arabidopsis thaliana (Q9FWA3), Arabidopsis thaliana
Manually annotated by BRENDA team
Corpas, F.J.; Gonzalez-Gordo, S.; Palma, J.M.
Nitric oxide and hydrogen sulfide modulate the NADPH-generating enzymatic system in higher plants
J. Exp. Bot.
72
830-847
2021
Arabidopsis thaliana (Q9FFR3), Arabidopsis thaliana (Q9FWA3), Arabidopsis thaliana (Q9SH69)
Manually annotated by BRENDA team